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The map label for this gene is nahR [H]

Identifier: 167623815

GI number: 167623815

Start: 2263907

End: 2264458

Strand: Reverse

Name: nahR [H]

Synonym: Shal_1885

Alternate gene names: 167623815

Gene position: 2264458-2263907 (Counterclockwise)

Preceding gene: 167623820

Following gene: 167623804

Centisome position: 43.32

GC content: 39.86

Gene sequence:

>552_bases
ATGGAAAGAGAGATTGATCTGAATTTATTGAAAATGCTCGTCCTCTTGAATAAATATCGTAATATGAAGCTCGTTGGCAG
AAAACTAGGCAAGACAGAAAGTGCAATAAGCAAGAGTCTATCAAGGCTTAGGGAGCACACTAACGATAAACTGTTTGTGC
GTGGCGCAGCCGGACTTGAACCGACGGAGTTCACATCCAGCCTCATTCCAAAAATCACTCAGGCGTTAGATCTAATTGAT
GACGCGTTTTTAAGCACCCAGTTTGATCCAAAGGAATATAAAAAGCCCATCACAATCGCACTGAATGGCATTACATTTGA
GTCAAATGGAACTGAAATTTACCAAAAAGTACACTCAAGCTTTCCTAATGCAGAAATTCGATTGCAGTCCTGGAGTAACA
GCACCAAAGAGTTAATCATTGAAGGCGAAATAGATATAGGTATACAACTGTTTGACGCGAGTCTCAATCAATCTATCAGC
AAATATTGTATAGAGATGAAATTGGATTTGTGGTGCACCAATCTCATGGAAAACCTAAGTGGAGTGAAGTGA

Upstream 100 bases:

>100_bases
TTTGTTGAGTTTCATAACCTGAATTTCTATCTTATTTTAGAATGGGCTAAGTTATGTTACCTTGAATATTTGGACTATTA
GGAAAGGAACACTTGAACAT

Downstream 100 bases:

>100_bases
TCCAATGGCCGCTCGAGATGATCCGGCTCAGAGGATGGAATGAAAATGTATTCTTACAATTAGAAACGCTCAAACAGAAA
GGAATATCGATTAATCTCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MEREIDLNLLKMLVLLNKYRNMKLVGRKLGKTESAISKSLSRLREHTNDKLFVRGAAGLEPTEFTSSLIPKITQALDLID
DAFLSTQFDPKEYKKPITIALNGITFESNGTEIYQKVHSSFPNAEIRLQSWSNSTKELIIEGEIDIGIQLFDASLNQSIS
KYCIEMKLDLWCTNLMENLSGVK

Sequences:

>Translated_183_residues
MEREIDLNLLKMLVLLNKYRNMKLVGRKLGKTESAISKSLSRLREHTNDKLFVRGAAGLEPTEFTSSLIPKITQALDLID
DAFLSTQFDPKEYKKPITIALNGITFESNGTEIYQKVHSSFPNAEIRLQSWSNSTKELIIEGEIDIGIQLFDASLNQSIS
KYCIEMKLDLWCTNLMENLSGVK
>Mature_183_residues
MEREIDLNLLKMLVLLNKYRNMKLVGRKLGKTESAISKSLSRLREHTNDKLFVRGAAGLEPTEFTSSLIPKITQALDLID
DAFLSTQFDPKEYKKPITIALNGITFESNGTEIYQKVHSSFPNAEIRLQSWSNSTKELIIEGEIDIGIQLFDASLNQSIS
KYCIEMKLDLWCTNLMENLSGVK

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=135, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790147, Length=137, Percent_Identity=29.1970802919708, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 20759; Mature: 20759

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEREIDLNLLKMLVLLNKYRNMKLVGRKLGKTESAISKSLSRLREHTNDKLFVRGAAGLE
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
PTEFTSSLIPKITQALDLIDDAFLSTQFDPKEYKKPITIALNGITFESNGTEIYQKVHSS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEECEEEECCCHHHHHHHHHC
FPNAEIRLQSWSNSTKELIIEGEIDIGIQLFDASLNQSISKYCIEMKLDLWCTNLMENLS
CCCCEEEEECCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVK
CCC
>Mature Secondary Structure
MEREIDLNLLKMLVLLNKYRNMKLVGRKLGKTESAISKSLSRLREHTNDKLFVRGAAGLE
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
PTEFTSSLIPKITQALDLIDDAFLSTQFDPKEYKKPITIALNGITFESNGTEIYQKVHSS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEECEEEECCCHHHHHHHHHC
FPNAEIRLQSWSNSTKELIIEGEIDIGIQLFDASLNQSISKYCIEMKLDLWCTNLMENLS
CCCCEEEEECCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]