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The map label for this gene is recD [H]

Identifier: 167623785

GI number: 167623785

Start: 2219255

End: 2221228

Strand: Reverse

Name: recD [H]

Synonym: Shal_1855

Alternate gene names: 167623785

Gene position: 2221228-2219255 (Counterclockwise)

Preceding gene: 167623786

Following gene: 167623784

Centisome position: 42.5

GC content: 48.13

Gene sequence:

>1974_bases
ATGATAACAACGACTCTGCCGATTAATGAATTGTTGAAACAGTGGCAAAATGAGCGTCTGCTCACCTCTCTTGATCGCCA
CTTTGCGTTAGAGATGACCAAGCAGCATCATGATTCATCGCCACTGTTTACGCTTATCTGTGCCCTTGTTAGTCAGCATC
TGTCGAGCCAACATACTTGCTTGCCGCTAAAACAGATAGATTTAACTAATCCGTTTAAAGAACAAAGCAGTCAATGCCAG
ATTAACCTAGATCTGAGTCAGCTAGAGCAAGCGCTATTAGCATTCGATGCCATCGGCACGCCTGAAGATGAAGAGCCTAA
GCCACTTATTATGGATAAAGGTAACCTTTATCTACAGCGGTATTACCACTACGAAAAAGAGGTCGCAGGCGCGCTCAAGC
GTTTAGCCCATTCGCCACAAACCAGTGAACAGAGCGACGCCAGTATTGAGCAAGCAAGCGAGTTACTGTCCAAACTTTTT
CCTCCGACAGAGCAGCAATATGACTGGCAAAAAATAGCCACCGCCACGGCAATGACTAAGAAGTTAGCCGTCATTACTGG
CGGCCCGGGTACAGGTAAAACGACTACGGTGACTAAGTTACTGTATTTGTTGTGCGAAGGGCAAGAGTTAACCATTCGAC
TGGTGGCGCCAACAGGTAAAGCGGCAGCGCGTTTAAGTGAGTCGATTAAGGCCTCAAAGCAGCGGCTTGCTAATGATCTA
AGCCAAGCGGGCGTCGCCGATTTAGACAAAAATATAGCCAACATTCCAGAAGAAGCGGCCACCCTGCACCGCTTGTTAGG
GGTTATTCCTAATTCACACCAGTTTAGGCACCATAAAGATAACCCGTTAAGACTCGATCTCTTAGTGATCGATGAAGCCT
CTATGGTCGACTTACCTATGATGCACAAGGTGTTATCTGCGCTACCTGAGCACGCCAGACTCATTTTACTTGGCGATCAG
GATCAGCTGGCCTCAGTGGAGGCTGGCGCTGTGCTCGCGGATATTTGCCAAGGCTTGAAGCAAGTCTCTAAAACAACCAA
GCAAAGCCGCTGGCATATGCGTTATTCGCAATCCCAAGCGGAGCTACTCAGTCAGCTAACCAGCACTGAGTTATCTGAGT
TTATCAACCCTAACCCCAAGATTGGCGATAGCCTCTGCATGTTAATGCACAGTCATCGTTTCAAAGGTGATGCCGGTATT
GGCCAGCTAGCCGCCGCGGTCAATCACGCTAATATTGCGCGTATTGCACAGGTATGGCAGACAGGCTATCAGGAGTTGCA
GTGGATAGAACATGGCTTGGTTAACACCCATAGCAGTGCTCAAACTAATACTGGACTGGAAAGCTTATTGGCCCAAGCCG
TTCAGCAGTACGGCGTTTATTTAGCCCAGATAAGCCAAACACAAGGCGATGCTGAGGCCATTATCGACTGCTTTAATCAG
TATCGCATTCTATGTGCGATGCGAGCGGGTGAATACGGCGTAGAGGGGATCAACCAAGGCGTGACGATGGCTCTCGCCGC
ACAAGGTCTCATTAATCCCGAGCAAGAGTTTTACGCTGGGAGACCGATTATCATACAGAGCAACGATTACAACCTTGGGC
TGTTTAATGGTGATATAGGGCTTATTTTACCCGATAATCACAGCGAAACGGGTCGCTTAATGGCGCACTTTATCCAGGCC
GACGGTAGCTTGCTTAAAGTCTTGCCTGCTAGACTGCCAAGCCATGAAACCTGTTATGCAATGACGGTACATAAAAGCCA
AGGCAGTGAGTTTAGTCACGTCTCTTTAGTACTGCCGATAAGGCCAAGTATTGCCCAGCAACAGTTACTGTCTAAAGAGT
TGATTTATACTGCCATTACTCGAGCTAAACACCACTTTACTTGCCTGGGAAGCCAAAGAGTATTTGAGCACGCAAGTACC
TGCCTAACCCAGCGTGCATCGGGATTAGCTCAGCGATTATGGCGCGAGGAATAA

Upstream 100 bases:

>100_bases
CGTTATTTACAAACTCGGCAACTCAACACTGTGAGACACTCTCAATGTCAGCTCCAACGTCAGGCTCAATGGCACAAGAT
AATACCTCTGTGGAGGTCAA

Downstream 100 bases:

>100_bases
ACCAAGTGAATAACTTTGTAAGCCTTAATTTAGTTAAGATGTAAATAATGGCAAATACTCGAATATAAAAGCAGCATTTA
AGCTAAATCGACTCGGCAAA

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 657; Mature: 657

Protein sequence:

>657_residues
MITTTLPINELLKQWQNERLLTSLDRHFALEMTKQHHDSSPLFTLICALVSQHLSSQHTCLPLKQIDLTNPFKEQSSQCQ
INLDLSQLEQALLAFDAIGTPEDEEPKPLIMDKGNLYLQRYYHYEKEVAGALKRLAHSPQTSEQSDASIEQASELLSKLF
PPTEQQYDWQKIATATAMTKKLAVITGGPGTGKTTTVTKLLYLLCEGQELTIRLVAPTGKAAARLSESIKASKQRLANDL
SQAGVADLDKNIANIPEEAATLHRLLGVIPNSHQFRHHKDNPLRLDLLVIDEASMVDLPMMHKVLSALPEHARLILLGDQ
DQLASVEAGAVLADICQGLKQVSKTTKQSRWHMRYSQSQAELLSQLTSTELSEFINPNPKIGDSLCMLMHSHRFKGDAGI
GQLAAAVNHANIARIAQVWQTGYQELQWIEHGLVNTHSSAQTNTGLESLLAQAVQQYGVYLAQISQTQGDAEAIIDCFNQ
YRILCAMRAGEYGVEGINQGVTMALAAQGLINPEQEFYAGRPIIIQSNDYNLGLFNGDIGLILPDNHSETGRLMAHFIQA
DGSLLKVLPARLPSHETCYAMTVHKSQGSEFSHVSLVLPIRPSIAQQQLLSKELIYTAITRAKHHFTCLGSQRVFEHAST
CLTQRASGLAQRLWREE

Sequences:

>Translated_657_residues
MITTTLPINELLKQWQNERLLTSLDRHFALEMTKQHHDSSPLFTLICALVSQHLSSQHTCLPLKQIDLTNPFKEQSSQCQ
INLDLSQLEQALLAFDAIGTPEDEEPKPLIMDKGNLYLQRYYHYEKEVAGALKRLAHSPQTSEQSDASIEQASELLSKLF
PPTEQQYDWQKIATATAMTKKLAVITGGPGTGKTTTVTKLLYLLCEGQELTIRLVAPTGKAAARLSESIKASKQRLANDL
SQAGVADLDKNIANIPEEAATLHRLLGVIPNSHQFRHHKDNPLRLDLLVIDEASMVDLPMMHKVLSALPEHARLILLGDQ
DQLASVEAGAVLADICQGLKQVSKTTKQSRWHMRYSQSQAELLSQLTSTELSEFINPNPKIGDSLCMLMHSHRFKGDAGI
GQLAAAVNHANIARIAQVWQTGYQELQWIEHGLVNTHSSAQTNTGLESLLAQAVQQYGVYLAQISQTQGDAEAIIDCFNQ
YRILCAMRAGEYGVEGINQGVTMALAAQGLINPEQEFYAGRPIIIQSNDYNLGLFNGDIGLILPDNHSETGRLMAHFIQA
DGSLLKVLPARLPSHETCYAMTVHKSQGSEFSHVSLVLPIRPSIAQQQLLSKELIYTAITRAKHHFTCLGSQRVFEHAST
CLTQRASGLAQRLWREE
>Mature_657_residues
MITTTLPINELLKQWQNERLLTSLDRHFALEMTKQHHDSSPLFTLICALVSQHLSSQHTCLPLKQIDLTNPFKEQSSQCQ
INLDLSQLEQALLAFDAIGTPEDEEPKPLIMDKGNLYLQRYYHYEKEVAGALKRLAHSPQTSEQSDASIEQASELLSKLF
PPTEQQYDWQKIATATAMTKKLAVITGGPGTGKTTTVTKLLYLLCEGQELTIRLVAPTGKAAARLSESIKASKQRLANDL
SQAGVADLDKNIANIPEEAATLHRLLGVIPNSHQFRHHKDNPLRLDLLVIDEASMVDLPMMHKVLSALPEHARLILLGDQ
DQLASVEAGAVLADICQGLKQVSKTTKQSRWHMRYSQSQAELLSQLTSTELSEFINPNPKIGDSLCMLMHSHRFKGDAGI
GQLAAAVNHANIARIAQVWQTGYQELQWIEHGLVNTHSSAQTNTGLESLLAQAVQQYGVYLAQISQTQGDAEAIIDCFNQ
YRILCAMRAGEYGVEGINQGVTMALAAQGLINPEQEFYAGRPIIIQSNDYNLGLFNGDIGLILPDNHSETGRLMAHFIQA
DGSLLKVLPARLPSHETCYAMTVHKSQGSEFSHVSLVLPIRPSIAQQQLLSKELIYTAITRAKHHFTCLGSQRVFEHAST
CLTQRASGLAQRLWREE

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=637, Percent_Identity=40.9733124018838, Blast_Score=412, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 72768; Mature: 72768

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITTTLPINELLKQWQNERLLTSLDRHFALEMTKQHHDSSPLFTLICALVSQHLSSQHTC
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
LPLKQIDLTNPFKEQSSQCQINLDLSQLEQALLAFDAIGTPEDEEPKPLIMDKGNLYLQR
CCHHHCCCCCCHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHH
YYHYEKEVAGALKRLAHSPQTSEQSDASIEQASELLSKLFPPTEQQYDWQKIATATAMTK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KLAVITGGPGTGKTTTVTKLLYLLCEGQELTIRLVAPTGKAAARLSESIKASKQRLANDL
EEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
SQAGVADLDKNIANIPEEAATLHRLLGVIPNSHQFRHHKDNPLRLDLLVIDEASMVDLPM
HHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHH
MHKVLSALPEHARLILLGDQDQLASVEAGAVLADICQGLKQVSKTTKQSRWHMRYSQSQA
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLSQLTSTELSEFINPNPKIGDSLCMLMHSHRFKGDAGIGQLAAAVNHANIARIAQVWQ
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TGYQELQWIEHGLVNTHSSAQTNTGLESLLAQAVQQYGVYLAQISQTQGDAEAIIDCFNQ
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
YRILCAMRAGEYGVEGINQGVTMALAAQGLINPEQEFYAGRPIIIQSNDYNLGLFNGDIG
HHHHHHHHCCCCCCCHHCCCHHHHHHHHCCCCCHHHHHCCCCEEEECCCCEEEEEECCEE
LILPDNHSETGRLMAHFIQADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSHVSLVLPI
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEC
RPSIAQQQLLSKELIYTAITRAKHHFTCLGSQRVFEHASTCLTQRASGLAQRLWREE
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MITTTLPINELLKQWQNERLLTSLDRHFALEMTKQHHDSSPLFTLICALVSQHLSSQHTC
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
LPLKQIDLTNPFKEQSSQCQINLDLSQLEQALLAFDAIGTPEDEEPKPLIMDKGNLYLQR
CCHHHCCCCCCHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHH
YYHYEKEVAGALKRLAHSPQTSEQSDASIEQASELLSKLFPPTEQQYDWQKIATATAMTK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KLAVITGGPGTGKTTTVTKLLYLLCEGQELTIRLVAPTGKAAARLSESIKASKQRLANDL
EEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
SQAGVADLDKNIANIPEEAATLHRLLGVIPNSHQFRHHKDNPLRLDLLVIDEASMVDLPM
HHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHH
MHKVLSALPEHARLILLGDQDQLASVEAGAVLADICQGLKQVSKTTKQSRWHMRYSQSQA
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLSQLTSTELSEFINPNPKIGDSLCMLMHSHRFKGDAGIGQLAAAVNHANIARIAQVWQ
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TGYQELQWIEHGLVNTHSSAQTNTGLESLLAQAVQQYGVYLAQISQTQGDAEAIIDCFNQ
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
YRILCAMRAGEYGVEGINQGVTMALAAQGLINPEQEFYAGRPIIIQSNDYNLGLFNGDIG
HHHHHHHHCCCCCCCHHCCCHHHHHHHHCCCCCHHHHHCCCCEEEECCCCEEEEEECCEE
LILPDNHSETGRLMAHFIQADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSHVSLVLPI
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEC
RPSIAQQQLLSKELIYTAITRAKHHFTCLGSQRVFEHASTCLTQRASGLAQRLWREE
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]