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The map label for this gene is rbgA [H]

Identifier: 167623693

GI number: 167623693

Start: 2112068

End: 2113006

Strand: Reverse

Name: rbgA [H]

Synonym: Shal_1763

Alternate gene names: 167623693

Gene position: 2113006-2112068 (Counterclockwise)

Preceding gene: 167623694

Following gene: 167623690

Centisome position: 40.43

GC content: 44.83

Gene sequence:

>939_bases
ATGGCAATTCAGTGGTATCCAGGACACATGCACAAGGCACGAAAAGAGATCGAAGAGGTTATGCCTCAAGTCGATTTGGT
GATAGAAGTGCTTGATGCAAGGATCCCTTATAGTAGTGAAAACCCAATGGTGCAAACACTGCGTGGTGATAAACCCTGTA
TTAAATTACTCAATAAATCTGACTTAGCCGATCCTGAGACCACCCAGCAGTGGATTGAATACCTAGAGCGAGAGCAAGGT
GTAAAAGCAATGGCCATTACGACATTGCAAGCATCACAAGTTAAGAAAATTCCAGACTTATGCCGTAAATTTGTCCCTAA
CCGTGACAAAATCGAAAAAGATATTCGTACCATGATCATGGGGATCCCTAACGTAGGTAAATCTACCATTATCAATACAT
TAGCAGGAAGAATGATCGCTAAAACCGGTAACGAGCCAGCCGTTACCAAAACTCAGCAACGCATCAATCTTCGAAACGGT
ATCGTGCTATCTGACACCCCTGGCATTTTGTGGCCTAAAGTCGATAACGAAAAAAGCAGCTATCGTCTCGCAGTAACAGG
TGCGATTAAAGACACCGCGATGGAGTATGAAGACGTAGCCATGTTTGCTGCAGAATACTTCCTTCAAGCTTATCCAGAAG
CGATTGCCGAGCGTTATAAGATCAAGCAGATGCCAGATACCGACATTGAGCTATTAGAAGCAATTGGCCGTAATCGCGGC
GCACTGCGCCCAGGTGGAAGAATCGATCTTCACAAAGCTTCAGAGGTGCTGCTACATGATTTCCGAGCAGGCAGAATCGG
CCAGTTATCACTTGAAACACCTGCAATGGCCGAAATCGAGAAAGCTGAAGTGGCTAAACTATTAGCAGAGAAAGAAGCGA
AAGAAGAAGCAAAACGTGAACAAGAGCGTTTAAAGCGCTCAGGTAAGCGCTTAAGCTAA

Upstream 100 bases:

>100_bases
AAGAGCCCAATAAGCGCCTAAAGGCGCTTTTTGTTTGTTAAACTTAAGCGTAACGAGGTAAAATCCCCGCAATTATGTAA
TTTGATAGTAGAGCGCACAC

Downstream 100 bases:

>100_bases
TACTCATTCCATTAAATAAAAAAGCACTCAACGAGTGCTTTTTTATTGTCTAATGTCTCTACTACTGTTGTTGTAGCATT
TTATTTAACCGCTCTAGCGA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKSDLADPETTQQWIEYLEREQG
VKAMAITTLQASQVKKIPDLCRKFVPNRDKIEKDIRTMIMGIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFLQAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPAMAEIEKAEVAKLLAEKEAKEEAKREQERLKRSGKRLS

Sequences:

>Translated_312_residues
MAIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKSDLADPETTQQWIEYLEREQG
VKAMAITTLQASQVKKIPDLCRKFVPNRDKIEKDIRTMIMGIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFLQAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPAMAEIEKAEVAKLLAEKEAKEEAKREQERLKRSGKRLS
>Mature_311_residues
AIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKSDLADPETTQQWIEYLEREQGV
KAMAITTLQASQVKKIPDLCRKFVPNRDKIEKDIRTMIMGIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNGI
VLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFLQAYPEAIAERYKIKQMPDTDIELLEAIGRNRGA
LRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPAMAEIEKAEVAKLLAEKEAKEEAKREQERLKRSGKRLS

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=293, Percent_Identity=28.6689419795222, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI7019419, Length=256, Percent_Identity=30.46875, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI296317324, Length=289, Percent_Identity=26.2975778546713, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI9506611, Length=289, Percent_Identity=26.2975778546713, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI45593130, Length=276, Percent_Identity=24.6376811594203, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI45643129, Length=276, Percent_Identity=24.6376811594203, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI45643127, Length=276, Percent_Identity=24.6376811594203, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17534827, Length=272, Percent_Identity=30.1470588235294, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=30.5555555555556, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32563985, Length=266, Percent_Identity=28.1954887218045, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71990926, Length=266, Percent_Identity=28.1954887218045, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32563983, Length=266, Percent_Identity=28.1954887218045, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25143545, Length=284, Percent_Identity=23.2394366197183, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=284, Percent_Identity=23.2394366197183, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6320842, Length=292, Percent_Identity=28.4246575342466, Blast_Score=90, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6324381, Length=269, Percent_Identity=27.5092936802974, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6323744, Length=241, Percent_Identity=29.045643153527, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6321339, Length=162, Percent_Identity=32.0987654320988, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI85815858, Length=302, Percent_Identity=28.476821192053, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28572990, Length=315, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI19922460, Length=302, Percent_Identity=27.8145695364238, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35249; Mature: 35118

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKS
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHCCC
DLADPETTQQWIEYLEREQGVKAMAITTLQASQVKKIPDLCRKFVPNRDKIEKDIRTMIM
CCCCCHHHHHHHHHHHHHCCCEEEHEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEKSS
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVAMFAAEYFLQAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPAMAEIEKAEVAKLLAEKEAKEEAKRE
CCCCCCCEEHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QERLKRSGKRLS
HHHHHHCCCCCC
>Mature Secondary Structure 
AIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKS
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHCCC
DLADPETTQQWIEYLEREQGVKAMAITTLQASQVKKIPDLCRKFVPNRDKIEKDIRTMIM
CCCCCHHHHHHHHHHHHHCCCEEEHEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEKSS
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVAMFAAEYFLQAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPAMAEIEKAEVAKLLAEKEAKEEAKRE
CCCCCCCEEHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QERLKRSGKRLS
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]