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The map label for this gene is ybbK [C]

Identifier: 167623573

GI number: 167623573

Start: 1970956

End: 1971732

Strand: Reverse

Name: ybbK [C]

Synonym: Shal_1642

Alternate gene names: 167623573

Gene position: 1971732-1970956 (Counterclockwise)

Preceding gene: 167623574

Following gene: 167623571

Centisome position: 37.72

GC content: 49.81

Gene sequence:

>777_bases
ATGGAACCCATTTTCGGAAATGGTAGCATCTTTATAGGCGTACTCACCTTCCTTATTGTCGGCTTGCTGGTCAGCATGTT
TAAGATCTTAAGAGAGTATGAACGCGGTGTGATCTTCCTATTGGGCCGTTTTTACCGAGTAAAGGGACCGGGATTGATCA
TAGTGATCCCCATCGTACAGCAGATGGTGAGAGTCGATCTGCGTACCGTAGTGATGGATGTTCCAACTCAGGATGTCATT
AGCCGCGATAACGTCTCGGTGCGCGTCAATGCGGTGATCTACTTTAGGGTGATCGATGCTCAAAAAGCGATTATCAACGT
CGAGGATTATCTGCAAGCCACATCACAGCTGGCACAAACGACCCTGCGTTCGGTGCTCGGTCAACACGAACTCGATGAGA
TGCTCGCTAACCGAGAGATGCTCAACACCGACATTCAAGCCATTCTCGATACCCGTACCGATGGCTGGGGGATTAAGGTG
TCCAATGTAGAGATAAAACATGTGGATCTGAATGAAACCATGATTAGGGCCATTGCAAGGCAGGCCGAAGCCGAGCGTAC
TCGTCGAGCAAAAGTGATCCATGCATCGGGTGAGATGGAAGCCTCGGCAAAACTGGTTGAAGCTGCCGAGAAACTCTCGG
CTGAGCCCAACGCCATCTTACTGCGTTATTTGCAAACCCTCACAGAGATTGCAGGCGAGAAGAACTCCACCATACTGTTT
CCACTGCCCATGGAGCTACTCAAGGGCGTATTAGGTCAGCAGGATAAAAAACCGTAG

Upstream 100 bases:

>100_bases
CGTCGTCGTGCGTCATGACCTTTCACTGGAGGTTGAACTGTCTCCAGTTTCTAATCAACAAGTACTAACCAAGAAGTGCT
AAATAGCTAAGGAGTCGAAT

Downstream 100 bases:

>100_bases
AGCCGAAAATGACTTTTCAAGGCGAGCGTCCTATCTAGCCTTTAAATACGAAAAAGCCCTCTATAAAGAGGGCTTTCTAT
TGTTAACTTAGCAGTTAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MEPIFGNGSIFIGVLTFLIVGLLVSMFKILREYERGVIFLLGRFYRVKGPGLIIVIPIVQQMVRVDLRTVVMDVPTQDVI
SRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQTTLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKV
SNVEIKHVDLNETMIRAIARQAEAERTRRAKVIHASGEMEASAKLVEAAEKLSAEPNAILLRYLQTLTEIAGEKNSTILF
PLPMELLKGVLGQQDKKP

Sequences:

>Translated_258_residues
MEPIFGNGSIFIGVLTFLIVGLLVSMFKILREYERGVIFLLGRFYRVKGPGLIIVIPIVQQMVRVDLRTVVMDVPTQDVI
SRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQTTLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKV
SNVEIKHVDLNETMIRAIARQAEAERTRRAKVIHASGEMEASAKLVEAAEKLSAEPNAILLRYLQTLTEIAGEKNSTILF
PLPMELLKGVLGQQDKKP
>Mature_258_residues
MEPIFGNGSIFIGVLTFLIVGLLVSMFKILREYERGVIFLLGRFYRVKGPGLIIVIPIVQQMVRVDLRTVVMDVPTQDVI
SRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQTTLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKV
SNVEIKHVDLNETMIRAIARQAEAERTRRAKVIHASGEMEASAKLVEAAEKLSAEPNAILLRYLQTLTEIAGEKNSTILF
PLPMELLKGVLGQQDKKP

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=246, Percent_Identity=48.3739837398374, Blast_Score=212, Evalue=3e-55,
Organism=Homo sapiens, GI21686995, Length=246, Percent_Identity=48.3739837398374, Blast_Score=212, Evalue=3e-55,
Organism=Homo sapiens, GI38016911, Length=248, Percent_Identity=47.1774193548387, Blast_Score=209, Evalue=1e-54,
Organism=Homo sapiens, GI7657615, Length=238, Percent_Identity=36.5546218487395, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI7305503, Length=181, Percent_Identity=36.4640883977901, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI20149563, Length=157, Percent_Identity=30.5732484076433, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI38016907, Length=64, Percent_Identity=57.8125, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI1786697, Length=231, Percent_Identity=34.6320346320346, Blast_Score=130, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI17569497, Length=251, Percent_Identity=42.2310756972112, Blast_Score=207, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI17569493, Length=251, Percent_Identity=45.0199203187251, Blast_Score=206, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI193209764, Length=251, Percent_Identity=45.0199203187251, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17569499, Length=243, Percent_Identity=48.1481481481481, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI25153583, Length=260, Percent_Identity=44.6153846153846, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI71987621, Length=260, Percent_Identity=44.6153846153846, Blast_Score=204, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17570459, Length=250, Percent_Identity=46, Blast_Score=204, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI71987612, Length=260, Percent_Identity=44.6153846153846, Blast_Score=204, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI17570161, Length=245, Percent_Identity=45.3061224489796, Blast_Score=187, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=245, Percent_Identity=45.3061224489796, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=238, Percent_Identity=44.9579831932773, Blast_Score=181, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=232, Percent_Identity=46.551724137931, Blast_Score=176, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=46.9945355191257, Blast_Score=142, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI32564147, Length=184, Percent_Identity=34.7826086956522, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI71989963, Length=114, Percent_Identity=50.8771929824561, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17542664, Length=166, Percent_Identity=23.4939759036145, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45556022, Length=248, Percent_Identity=52.4193548387097, Blast_Score=225, Evalue=2e-59,
Organism=Drosophila melanogaster, GI18860517, Length=246, Percent_Identity=47.5609756097561, Blast_Score=209, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24657857, Length=260, Percent_Identity=47.3076923076923, Blast_Score=200, Evalue=9e-52,
Organism=Drosophila melanogaster, GI281365664, Length=256, Percent_Identity=47.65625, Blast_Score=199, Evalue=1e-51,
Organism=Drosophila melanogaster, GI62484448, Length=260, Percent_Identity=47.3076923076923, Blast_Score=199, Evalue=1e-51,
Organism=Drosophila melanogaster, GI62484274, Length=260, Percent_Identity=47.3076923076923, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI28573263, Length=254, Percent_Identity=36.2204724409449, Blast_Score=178, Evalue=3e-45,
Organism=Drosophila melanogaster, GI281361633, Length=248, Percent_Identity=35.8870967741936, Blast_Score=171, Evalue=4e-43,
Organism=Drosophila melanogaster, GI21356845, Length=237, Percent_Identity=37.5527426160338, Blast_Score=171, Evalue=4e-43,
Organism=Drosophila melanogaster, GI281361631, Length=248, Percent_Identity=35.8870967741936, Blast_Score=171, Evalue=4e-43,
Organism=Drosophila melanogaster, GI281361635, Length=186, Percent_Identity=37.0967741935484, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI45550506, Length=181, Percent_Identity=37.0165745856354, Blast_Score=125, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28896; Mature: 28896

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPIFGNGSIFIGVLTFLIVGLLVSMFKILREYERGVIFLLGRFYRVKGPGLIIVIPIVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHEECCCCEEEEHHHHH
QMVRVDLRTVVMDVPTQDVISRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQT
HHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHCCHHHHHHHHHHHHHH
TLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKVSNVEIKHVDLNETMIRAIAR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCHHHHHHHHHH
QAEAERTRRAKVIHASGEMEASAKLVEAAEKLSAEPNAILLRYLQTLTEIAGEKNSTILF
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
PLPMELLKGVLGQQDKKP
ECHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEPIFGNGSIFIGVLTFLIVGLLVSMFKILREYERGVIFLLGRFYRVKGPGLIIVIPIVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHEECCCCEEEEHHHHH
QMVRVDLRTVVMDVPTQDVISRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQT
HHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHCCHHHHHHHHHHHHHH
TLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKVSNVEIKHVDLNETMIRAIAR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCHHHHHHHHHH
QAEAERTRRAKVIHASGEMEASAKLVEAAEKLSAEPNAILLRYLQTLTEIAGEKNSTILF
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
PLPMELLKGVLGQQDKKP
ECHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]