| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623445
Identifier: 167623445
GI number: 167623445
Start: 1824161
End: 1824550
Strand: Reverse
Name: 167623445
Synonym: Shal_1514
Alternate gene names: NA
Gene position: 1824550-1824161 (Counterclockwise)
Preceding gene: 167623446
Following gene: 167623444
Centisome position: 34.91
GC content: 42.31
Gene sequence:
>390_bases ATGAATAGCCTACAGTTTAACCTCAACAGAAATATTATGGCCAAGCACTCCATCAGCAGAGAGATAGAACAGTTTATGCT GCTAAATCAAGTATCCGATGTGAAGCGATTCAAAGTAATCACCTGTGTACTAGAAGCCGTTTCCAACGTATTTACCCATG CGGCCCCTAAAATTAACTCTCTAATCATCATTTTGCACTGTGATCAGCAGCAGATAATCATCGACCTGCTAGATAACTCA CAGATGCAAGCCCTAACGCCACCAACAGATTGTCCACCAGCTAAAGCCACTTCAGGAAGAGGACTTTGGATCATCAATAG TTGGATGGATGATGTTCGTATTCAAGAAACCGTTGCCGGTACGCACTTACAGTTTAGTATTGCGGTTTAA
Upstream 100 bases:
>100_bases ACTCTGGCAAGAAAAACAAGCCCAAGACGATATCTCTCTGATGCTAATCTCAACCACAAATACCTTGTCCCATTGTGGTT CTCAAATGTAAGGAAGCACT
Downstream 100 bases:
>100_bases AAGAAGGTACTAGGGCGTTCGCCAGCTCACTGCTAGGACGCTCCGCTTCGAGGACGGCCTTCGGCCTGCTAGGAAATCAA AAGCAAAACAGTGCCACCTT
Product: putative anti-sigma regulatory factor, serine/threonine protein kinase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 129; Mature: 129
Protein sequence:
>129_residues MNSLQFNLNRNIMAKHSISREIEQFMLLNQVSDVKRFKVITCVLEAVSNVFTHAAPKINSLIIILHCDQQQIIIDLLDNS QMQALTPPTDCPPAKATSGRGLWIINSWMDDVRIQETVAGTHLQFSIAV
Sequences:
>Translated_129_residues MNSLQFNLNRNIMAKHSISREIEQFMLLNQVSDVKRFKVITCVLEAVSNVFTHAAPKINSLIIILHCDQQQIIIDLLDNS QMQALTPPTDCPPAKATSGRGLWIINSWMDDVRIQETVAGTHLQFSIAV >Mature_129_residues MNSLQFNLNRNIMAKHSISREIEQFMLLNQVSDVKRFKVITCVLEAVSNVFTHAAPKINSLIIILHCDQQQIIIDLLDNS QMQALTPPTDCPPAKATSGRGLWIINSWMDDVRIQETVAGTHLQFSIAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14515; Mature: 14515
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLQFNLNRNIMAKHSISREIEQFMLLNQVSDVKRFKVITCVLEAVSNVFTHAAPKINS CCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LIIILHCDQQQIIIDLLDNSQMQALTPPTDCPPAKATSGRGLWIINSWMDDVRIQETVAG EEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCC THLQFSIAV CEEEEEEEC >Mature Secondary Structure MNSLQFNLNRNIMAKHSISREIEQFMLLNQVSDVKRFKVITCVLEAVSNVFTHAAPKINS CCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LIIILHCDQQQIIIDLLDNSQMQALTPPTDCPPAKATSGRGLWIINSWMDDVRIQETVAG EEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCC THLQFSIAV CEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA