| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623435
Identifier: 167623435
GI number: 167623435
Start: 1810030
End: 1811427
Strand: Reverse
Name: 167623435
Synonym: Shal_1504
Alternate gene names: NA
Gene position: 1811427-1810030 (Counterclockwise)
Preceding gene: 167623436
Following gene: 167623431
Centisome position: 34.66
GC content: 43.85
Gene sequence:
>1398_bases ATGCAGCACTCTATATTTGACTGGATAAAAGCCATAAGCAGAAAGTTGATTTTTATGCTGTCAGCCCTCATGCCTCGCAG TGAAAATAAGGCGTTGTTTGGCAGCTATAAGGAAGGTTTTTGCGATAATAGCAAGTATCTATACTTGCACTGGCAACAAA CAGAATTTATTCGCTGCATCTGGATTAGCGGCAACCGCGACGTGATTAAGCAACTACAGAGTCAAAATCGAGAAGTGTAT TATCGCTGGTCGATGAAGGGGATTTTTCATGCCCTGACAGCCAAATACTACTTCTATAATAGCTATATCGGCGATATTAA TCAGTGGCTTGCAAATGGTGCGCAGAAGATAAACCTATGGCATGGATTGCCGATGAAGAAAATTGAATTCGACATTAACA CCGGGCCAATGGCGCAAGTGTTTAACCCTAAAGGAAAGTTGGCGACATGCAAGCAGTGGCTATTCGCCCACCAGCAACAC ATTACACCCGACTTGATGCTAAGCCCAAGTGAGCTTATCGACACCCTTTTTAGCAGCGCATTTAAGCTTGATAGCTCGCA GCTTTTACGCGCAACCAATCCAAGAACCGATTACTACACCCTGTACTCAAATAAGCACTCAAGCATGCACTCAAGTAAGA ACTCAAAACAGGACTCAAACCAGGACTCAAGTAAGCACTTAAGCCAGCGCTCTAGCCAGTGCCCAAGCGAGGCTCAATCA CTCGATATACTTTTCGGGGAAAATACAAGCTCAACGCTACGGACTAATCGCGAGCAAGCTATTCGTTCAGGTATTAGCCC GACTATTAGCCCGAGCATTATTTTGTACGTCCCCTCATGGCGTGATAGCCATCAGGAAGGCAATCCATACGCCAAGGCTT TTGACTGGCAGCGGTTGTCAGATCATTTAGTGGCTAATAATCAATTGTTTTTACTGCGTCTACACCCTAATGAAGCAAGC TTGGCAGATGAGCTTACGAGTTACGTCAATATCATCAATATTTCACAATTTGAAGATGTCTATGGCTTCTTGAAAGATGT CGATCAGCTTATCACCGACTACTCATCGCTATTTATCGATGCACTACCACTGGGCACGCCTATCTGCTTCTATCGCTTCG ATGAGCAGCATTATCAACAAGATTGCCGCGATATGTACGAATACGCCGAAAAACTCCCAGATATCGCGCCTAAATGCACA GACTTTGACGAGTTATTAGAGCAGTTAGCACCGGAGGCAATCGCGAAGCAGAAATCTAACGCTATAAACGGTGAGCAAAG GGCTGAACAAAAAAGTTATAAAAAGAACTATCAAGCAGTAACAGAGCTATTCTGGGGAAAGGATACGCCAAATGCGTTTG AAGCATTAGAAGAAATAATTATTAAAAGAAGGACCTAG
Upstream 100 bases:
>100_bases CCACTGAGATAAAAAGTAACCTAGCACAACCTAAACCCCTTGGTAATCACATTGGTGCCCCAGCAAATGATCCGACATCG ACCAAGAAGATAGATAAGTA
Downstream 100 bases:
>100_bases GTTAAAATAAGATCCTAGGTTCTAGGACGCTCCGCTCTGAGGACGGCCTTCAGCCTGCTAGGAAATCAAAAGCAAAACTG CGTTGCCTTGACTTTGTCGC
Product: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
Products: NA
Alternate protein names: TagB Protein; Poly(Glycerophosphate) Glycerophosphotransferase; Peptidyl-Dipeptidase A; Glycerophosphotransferase; Glycosyl/Glycerophosphate Transferase
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCIWISGNRDVIKQLQSQNREVY YRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLWHGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQH ITPDLMLSPSELIDTLFSSAFKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLSDHLVANNQLFLLRLHPNEAS LADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFIDALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCT DFDELLEQLAPEAIAKQKSNAINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT
Sequences:
>Translated_465_residues MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCIWISGNRDVIKQLQSQNREVY YRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLWHGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQH ITPDLMLSPSELIDTLFSSAFKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLSDHLVANNQLFLLRLHPNEAS LADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFIDALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCT DFDELLEQLAPEAIAKQKSNAINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT >Mature_465_residues MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCIWISGNRDVIKQLQSQNREVY YRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLWHGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQH ITPDLMLSPSELIDTLFSSAFKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLSDHLVANNQLFLLRLHPNEAS LADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFIDALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCT DFDELLEQLAPEAIAKQKSNAINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT
Specific function: Unknown
COG id: COG1887
COG function: function code M; Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53940; Mature: 53940
Theoretical pI: Translated: 6.99; Mature: 6.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCI CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCCEEEEEECCCCEEEEE WISGNRDVIKQLQSQNREVYYRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLW EEECCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHC HGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQHITPDLMLSPSELIDTLFSSA CCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH FKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS HCCCHHHHHHCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHC LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLS EEEEECCCCCHHHHCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCHHHHH DHLVANNQLFLLRLHPNEASLADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFID HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCTDFDELLEQLAPEAIAKQKSN HHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHCC AINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCI CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCCEEEEEECCCCEEEEE WISGNRDVIKQLQSQNREVYYRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLW EEECCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHC HGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQHITPDLMLSPSELIDTLFSSA CCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH FKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS HCCCHHHHHHCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHC LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLS EEEEECCCCCHHHHCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCHHHHH DHLVANNQLFLLRLHPNEASLADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFID HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCTDFDELLEQLAPEAIAKQKSN HHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHCC AINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA