Click here to switch to the map view.

The map label for this gene is yclF [H]

Identifier: 167623412

GI number: 167623412

Start: 1779657

End: 1781162

Strand: Reverse

Name: yclF [H]

Synonym: Shal_1481

Alternate gene names: 167623412

Gene position: 1781162-1779657 (Counterclockwise)

Preceding gene: 167623431

Following gene: 167623410

Centisome position: 34.08

GC content: 45.29

Gene sequence:

>1506_bases
ATGAGCGCAGCAAAACCCCAGGGGACGATGCTCGGGCATCCTAAGGGACTGTTCCTGTTATTTACGACAGAACTATGGGA
ACGTTTCAGTTACTACGCAATGCGTGCCATTTTGGTGTTGTATTTGGTTGACCAAGTGCACAATCAAGGTGGTGGCGGAT
TAGGTTGGACACAAGCTGACGCTCTATCGCTTTACGGTACATTTACCGCGTTAGTTTATTTAACCCCGCTAATTGGTGGC
TGGTTAGCCGATAACGTATTAGGACAGCGTAAATCAATTTATATTGGTGGCGCACTGATGGCCATGGGCCAATTCCTATT
AGCAGCGCCGCACGAATGGGTACCAGGTTCAGCGACCCAAATGTTCTACCTCGGCTTAGGCATACTTATTCTTGGTAACG
GTCTATTTAAGCCAAACATCTCTACTATGGTTGGTGACCTATATGAAGAAGGCGATCATCGCCGTGATGGTGCATTCACC
ATTTTCTACATGGGCATTAACTTAGGTGCTGCCTTATCGGGCTTCGTTGTAGCTTGGGCTTATACTAGTTTCGGTTATAC
CGACGTTATTGATGGTAAAGAAGTCTTTATCAATAACTGGCAGGCAGGTTTCTTCTGTGCCGGTGTTGGTATGGTTATAT
CATTAATTATCCAATTCTTATTCGCGCAAAAACTACTAGGCGATATTGGTACCGTTCCTGCGGCTAAATTGGAAAGACAA
AAAGCGGCTGAATCTGGCCAAGTACGCAAAGAGCCTCTGACGAAAATTGAACGTGATCGCATTAAAGTTATCATGGTCAT
GGGTCTATTCACGATTATCTTCTGGGCTGGTTTCGAGCAAGCCGGTGGCTTGATGAACCTGTTCACCAACGACTTTACTG
ACCGTATGATTGGTGGATGGGAAGTTCCGACGACTTACTTCCAGTCATTAAATGCGATCTTTATCGTATTGTTCGCACCT
GTGATTGCTTCTATTTGGATCCGCTTAGGTAAGAATGAGCCAAACTCACCAGTTAAGTTTGCATTAGGTCTAGTACTACT
AGGTATTGGTTTCCTATTCATGATTGGTGCGGTTTTACAGATGGATGGTGACGCTGGTGCTAAGTCAAGCATGTGGTGGT
TAGTGGGTGCATACTTCTTCCATACAATGGGTGAGTTATGTCTATCTCCTATTGGCCTATCTATGGTGACTAAGCTGGCT
CCACTACGTATCGCTTCATTAATGATGGGTGCATGGTTCCTGTTTATTGCCGCTGCTAACTTTGTTGCTGGTATCGTCGG
TTCAATGATTGGTCACGGTGGAGCGAAAGAGGAGCAACTGGCTAACGCTATGTCGATCTTCGCTGGTATCGCAATCACAG
CCGCTATCTCTGGTGTTGTTCTTTACTTTATGGCTGATAAGCTAGTTAGCTGGATGCATGGCGCAGAAGATGGACCTCAT
ACTGAAGAAGAAGCTTTGACAGAAGAGATTGCTGTTACAGCAGAGCATGAGGCTATTAGAAGATAA

Upstream 100 bases:

>100_bases
AACTGACTGTTTGCACTGAAAGCTGTAATAATTTAAGCAAATCAAATTTCTGTAGTGATCATTGAGCTGCAGGCAATCAC
AAGCGAAGGTGGAAGAATAC

Downstream 100 bases:

>100_bases
AGCGGCAAAGACGGTTGAAATCCGATTTAAGCTGAGACGGTTTAAAGCCGAATAAGCAAAGACGGTTTAAAGCCGATTAA
GGCTAAGATGATAAGTGCCG

Product: amino acid/peptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MSAAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDQVHNQGGGGLGWTQADALSLYGTFTALVYLTPLIGG
WLADNVLGQRKSIYIGGALMAMGQFLLAAPHEWVPGSATQMFYLGLGILILGNGLFKPNISTMVGDLYEEGDHRRDGAFT
IFYMGINLGAALSGFVVAWAYTSFGYTDVIDGKEVFINNWQAGFFCAGVGMVISLIIQFLFAQKLLGDIGTVPAAKLERQ
KAAESGQVRKEPLTKIERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGGWEVPTTYFQSLNAIFIVLFAP
VIASIWIRLGKNEPNSPVKFALGLVLLGIGFLFMIGAVLQMDGDAGAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLA
PLRIASLMMGAWFLFIAAANFVAGIVGSMIGHGGAKEEQLANAMSIFAGIAITAAISGVVLYFMADKLVSWMHGAEDGPH
TEEEALTEEIAVTAEHEAIRR

Sequences:

>Translated_501_residues
MSAAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDQVHNQGGGGLGWTQADALSLYGTFTALVYLTPLIGG
WLADNVLGQRKSIYIGGALMAMGQFLLAAPHEWVPGSATQMFYLGLGILILGNGLFKPNISTMVGDLYEEGDHRRDGAFT
IFYMGINLGAALSGFVVAWAYTSFGYTDVIDGKEVFINNWQAGFFCAGVGMVISLIIQFLFAQKLLGDIGTVPAAKLERQ
KAAESGQVRKEPLTKIERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGGWEVPTTYFQSLNAIFIVLFAP
VIASIWIRLGKNEPNSPVKFALGLVLLGIGFLFMIGAVLQMDGDAGAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLA
PLRIASLMMGAWFLFIAAANFVAGIVGSMIGHGGAKEEQLANAMSIFAGIAITAAISGVVLYFMADKLVSWMHGAEDGPH
TEEEALTEEIAVTAEHEAIRR
>Mature_500_residues
SAAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDQVHNQGGGGLGWTQADALSLYGTFTALVYLTPLIGGW
LADNVLGQRKSIYIGGALMAMGQFLLAAPHEWVPGSATQMFYLGLGILILGNGLFKPNISTMVGDLYEEGDHRRDGAFTI
FYMGINLGAALSGFVVAWAYTSFGYTDVIDGKEVFINNWQAGFFCAGVGMVISLIIQFLFAQKLLGDIGTVPAAKLERQK
AAESGQVRKEPLTKIERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGGWEVPTTYFQSLNAIFIVLFAPV
IASIWIRLGKNEPNSPVKFALGLVLLGIGFLFMIGAVLQMDGDAGAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAP
LRIASLMMGAWFLFIAAANFVAGIVGSMIGHGGAKEEQLANAMSIFAGIAITAAISGVVLYFMADKLVSWMHGAEDGPHT
EEEALTEEIAVTAEHEAIRR

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=397, Percent_Identity=28.463476070529, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI226371746, Length=350, Percent_Identity=24.8571428571429, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI226371748, Length=347, Percent_Identity=23.9193083573487, Blast_Score=83, Evalue=6e-16,
Organism=Escherichia coli, GI1787922, Length=496, Percent_Identity=31.6532258064516, Blast_Score=223, Evalue=3e-59,
Organism=Escherichia coli, GI1789911, Length=527, Percent_Identity=27.5142314990512, Blast_Score=192, Evalue=5e-50,
Organism=Escherichia coli, GI1790572, Length=460, Percent_Identity=29.7826086956522, Blast_Score=189, Evalue=5e-49,
Organism=Escherichia coli, GI1786927, Length=475, Percent_Identity=29.0526315789474, Blast_Score=175, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI71987453, Length=384, Percent_Identity=25.2604166666667, Blast_Score=89, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17569141, Length=360, Percent_Identity=26.3888888888889, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17541704, Length=354, Percent_Identity=26.271186440678, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28571098, Length=383, Percent_Identity=27.6762402088773, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI28571102, Length=383, Percent_Identity=27.6762402088773, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28571100, Length=383, Percent_Identity=27.6762402088773, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24639585, Length=356, Percent_Identity=27.247191011236, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24639583, Length=168, Percent_Identity=34.5238095238095, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24639581, Length=168, Percent_Identity=34.5238095238095, Blast_Score=89, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 54439; Mature: 54308

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDQVHNQGGGGLGWTQAD
CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ALSLYGTFTALVYLTPLIGGWLADNVLGQRKSIYIGGALMAMGQFLLAAPHEWVPGSATQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCCCHHH
MFYLGLGILILGNGLFKPNISTMVGDLYEEGDHRRDGAFTIFYMGINLGAALSGFVVAWA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
YTSFGYTDVIDGKEVFINNWQAGFFCAGVGMVISLIIQFLFAQKLLGDIGTVPAAKLERQ
HHHCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KAAESGQVRKEPLTKIERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGGW
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCC
EVPTTYFQSLNAIFIVLFAPVIASIWIRLGKNEPNSPVKFALGLVLLGIGFLFMIGAVLQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDGDAGAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGAWFLFIAAAN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVAGIVGSMIGHGGAKEEQLANAMSIFAGIAITAAISGVVLYFMADKLVSWMHGAEDGPH
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TEEEALTEEIAVTAEHEAIRR
CHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SAAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDQVHNQGGGGLGWTQAD
CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH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CHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]