| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is flhB [H]
Identifier: 167623392
GI number: 167623392
Start: 1757618
End: 1758751
Strand: Direct
Name: flhB [H]
Synonym: Shal_1461
Alternate gene names: 167623392
Gene position: 1757618-1758751 (Clockwise)
Preceding gene: 167623391
Following gene: 167623393
Centisome position: 33.63
GC content: 46.3
Gene sequence:
>1134_bases ATGGCTGAAAACGATAGTAGCCAAGAAAAAACAGAGGAAGCCACCTCCAGAAAGTTGCAACAGGCCAAAGATAAAGGGCA GGTTGCACGCTCAAAAGAGTTGGGGACTTCTGCTGTGCTGATCGCTGCGTCAGTAGGCTTGTTAATGACGGGTCCTGATA TCGCACAGGCGATGCATAACATCATGACGAAGTTGTTTACGATGAGCCGTGATGAGATTTTCGACACCAAGCAGATGATG AATGTTTGGGGCGTAATAGGCACTGAACTTGCGCTCCCTTTGATGGGTTTTATTGTCTTTTTAGCACTCATCGCATTTGC GGGTAACGTTGCTCTCGGTGGGATCTCTTTCTCCGTTAAAGCGTTTATGCCAAAAGCCAGTAAGATGAGCCCAATGGCGG GCTTTAAGCGGATGTTTGGTGTGCAGGCATTAGTGGAGTTAACCAAAGGTATTGCCAAGTTTTCCGTAGTCGCCATTACC GCCTTTTTGCTACTCAGCACCTACTTAAATGATATTTTGATGCTGTCGCAAGACCATTTACCTGGCAATATTTACCATGC ACTCGATATTGTGGTGTGGATCTTTATTTTACTCTGCGCATCAACCTTCTTGATTGTCGTTATCGACGTACCGTTTCAGA TATGGAATCACGCTAAGCAGCTCAAGATGACGAAGCAGGAAGTGAAAGACGAATATAAGGATACCGAAGGTAAACCAGAG GTTAAAGGCCGTATTCGTCAGTTACAACATGAGATGTCTCAACGACGTATGATGGGCGAAGTGCCAAATGCTGACGTTAT TGTCGTCAACCCCGAACATTACGCCGTGGCTGTTAAGTATGATGCGACTCGCTCTACTGCACCATTTGTTGTGGCCAAAG GGGTGGATGAAGTTGCCTTTAAAATTCGAGAAATTGCAAGAGAACACGATGTGGCGATAGTATCGGCGCCGCCACTGGCT CGCGCTATTTTTCATACCACTAAGATTGACCAAGAGATCCCAGAGGGATTATTTACCGCGGTCGCGCAGGTGCTCGCTTA TGTATTCCAATTAAGACAATATCAGAAGGGTAAGGGGAGACGTCCAAATCCGGTCCCAGTAAAGCAGCCGATCCCAGATG ATTTAAAGCATTAA
Upstream 100 bases:
>100_bases TGAGCTGCAGTGCCGCGCCGACGGCGGGCTTTAATAATGCGTTATAGCGACTTTACTATCAGTCGTATGGCTTTCTTCGC ACTATGGAGGGCGGCTATAA
Downstream 100 bases:
>100_bases TTAAAATTTATGCTTGAAAATCAACCACTCAGTACGCGAGATGTTCTTTGCTAGCGCCTTTCAGGTTATAGTTAATCCTT ATTATAAATAAGGTTGGTAC
Product: flagellar biosynthesis protein FlhB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMTGPDIAQAMHNIMTKLFTMSRDEIFDTKQMM NVWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSVKAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAIT AFLLLSTYLNDILMLSQDHLPGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKPE VKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVAFKIREIAREHDVAIVSAPPLA RAIFHTTKIDQEIPEGLFTAVAQVLAYVFQLRQYQKGKGRRPNPVPVKQPIPDDLKH
Sequences:
>Translated_377_residues MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMTGPDIAQAMHNIMTKLFTMSRDEIFDTKQMM NVWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSVKAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAIT AFLLLSTYLNDILMLSQDHLPGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKPE VKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVAFKIREIAREHDVAIVSAPPLA RAIFHTTKIDQEIPEGLFTAVAQVLAYVFQLRQYQKGKGRRPNPVPVKQPIPDDLKH >Mature_376_residues AENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMTGPDIAQAMHNIMTKLFTMSRDEIFDTKQMMN VWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSVKAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITA FLLLSTYLNDILMLSQDHLPGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKPEV KGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVAFKIREIAREHDVAIVSAPPLAR AIFHTTKIDQEIPEGLFTAVAQVLAYVFQLRQYQKGKGRRPNPVPVKQPIPDDLKH
Specific function: Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin [H]
COG id: COG1377
COG function: function code NU; Flagellar biosynthesis pathway, component FlhB
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type III secretion exporter family [H]
Homologues:
Organism=Escherichia coli, GI1788188, Length=373, Percent_Identity=38.3378016085791, Blast_Score=244, Evalue=1e-65,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006136 - InterPro: IPR006135 [H]
Pfam domain/function: PF01312 Bac_export_2 [H]
EC number: NA
Molecular weight: Translated: 41825; Mature: 41693
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMTGPDIAQAMHN CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH IMTKLFTMSRDEIFDTKQMMNVWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSVK HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEHH AFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITAFLLLSTYLNDILMLSQDHL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKPE CCHHHHHHHHHHHHHHHHHHHHHEEEHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH VKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVAF HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCEECCHHHHHH KIREIAREHDVAIVSAPPLARAIFHTTKIDQEIPEGLFTAVAQVLAYVFQLRQYQKGKGR HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RPNPVPVKQPIPDDLKH CCCCCCCCCCCCHHCCC >Mature Secondary Structure AENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMTGPDIAQAMHN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH IMTKLFTMSRDEIFDTKQMMNVWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSVK HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEHH AFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITAFLLLSTYLNDILMLSQDHL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKPE CCHHHHHHHHHHHHHHHHHHHHHEEEHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH VKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVAF HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCEECCHHHHHH KIREIAREHDVAIVSAPPLARAIFHTTKIDQEIPEGLFTAVAQVLAYVFQLRQYQKGKGR HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RPNPVPVKQPIPDDLKH CCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8002587; 11677609; 3298217 [H]