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The map label for this gene is fliR [H]

Identifier: 167623391

GI number: 167623391

Start: 1756754

End: 1757551

Strand: Direct

Name: fliR [H]

Synonym: Shal_1460

Alternate gene names: 167623391

Gene position: 1756754-1757551 (Clockwise)

Preceding gene: 167623390

Following gene: 167623392

Centisome position: 33.61

GC content: 47.62

Gene sequence:

>798_bases
ATGGAGATCTTACTCGATACCATCATGAATGGCATTGCGGGTTATTTGTGGCCATTAACCCGAATTTCTAGCATGTTTAT
GGTGATGGCAGTGTTTGGTGCAACCACGACTCCCACAAGAGTGAGACTATTATTGTCGGTTGCTGTCACCGTAGCCGTGG
CCCCAGTGTTGCCTGCTATGCCAACCATTGATCTGTTTTCATTAAGCGCCGCTTTCGTTACCGCGCAGCAAATCATTATC
GGCGTCGCCATGGGGTTTGCCACATTATTGCTCATGCAGACCTTTGTGCTTACCGGTCAGATCATCGGTATGCAGACCAG
CTTAGGTTTCGCGTCTATGGTCGATCCGAGCTCAGGCCAACAAACACCTGTCATTGGTAACTTCTTCCTGCTACTGACCA
CTGTGATATTTTTGGCCGTCGATGGTCACCTGTTATTAATAAAGATGGTGATCGCCAGCTTTGATTCTATTCCGGTGTCA
ATGCAAGGCTTAAGTCTGGTTAGTTATCGCTTATTTACCGAATTTGTGGGCTATATGTTTGGTGCTGCTTTGACCATGTC
GCTATCGGCGATTGTGGCGCTGCTCACTATTAACTTGTCATTTGGTGTAATGACCCGCGCCTCACCACAGTTAAATATCT
TCTCTATCGGTTTTCCTGTCACCATGATTGCAGGCTTGTTCATTCTTTGGTTAACGTTGTCGCCAATTATGACGCATTTT
GACGAGGTGTGGCGTGAAGTTCAGCTGCTACTTTGTAATGTGCTTGAGCTGCAGTGCCGCGCCGACGGCGGGCTTTAA

Upstream 100 bases:

>100_bases
TTTTGAACATGGATTTACTTTCCCCGATGTTAAATATGATCTGCTTGCAGGTGATAGGCTAACTATGGCTATTAATCTCC
TTATTAATAGATTGAGTTAG

Downstream 100 bases:

>100_bases
TAATGCGTTATAGCGACTTTACTATCAGTCGTATGGCTTTCTTCGCACTATGGAGGGCGGCTATAAATGGCTGAAAACGA
TAGTAGCCAAGAAAAAACAG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MEILLDTIMNGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAMPTIDLFSLSAAFVTAQQIII
GVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFFLLLTTVIFLAVDGHLLLIKMVIASFDSIPVS
MQGLSLVSYRLFTEFVGYMFGAALTMSLSAIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHF
DEVWREVQLLLCNVLELQCRADGGL

Sequences:

>Translated_265_residues
MEILLDTIMNGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAMPTIDLFSLSAAFVTAQQIII
GVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFFLLLTTVIFLAVDGHLLLIKMVIASFDSIPVS
MQGLSLVSYRLFTEFVGYMFGAALTMSLSAIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHF
DEVWREVQLLLCNVLELQCRADGGL
>Mature_265_residues
MEILLDTIMNGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAMPTIDLFSLSAAFVTAQQIII
GVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFFLLLTTVIFLAVDGHLLLIKMVIASFDSIPVS
MQGLSLVSYRLFTEFVGYMFGAALTMSLSAIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHF
DEVWREVQLLLCNVLELQCRADGGL

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=243, Percent_Identity=33.7448559670782, Blast_Score=120, Evalue=6e-29,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28617; Mature: 28617

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILLDTIMNGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PTIDLFSLSAAFVTAQQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHCCCCCCCC
QTPVIGNFFLLLTTVIFLAVDGHLLLIKMVIASFDSIPVSMQGLSLVSYRLFTEFVGYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
GAALTMSLSAIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHF
HHHHHHHHHHHHHHHHHHHHHCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWREVQLLLCNVLELQCRADGGL
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEILLDTIMNGIAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PTIDLFSLSAAFVTAQQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHCCCCCCCC
QTPVIGNFFLLLTTVIFLAVDGHLLLIKMVIASFDSIPVSMQGLSLVSYRLFTEFVGYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
GAALTMSLSAIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHF
HHHHHHHHHHHHHHHHHHHHHCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWREVQLLLCNVLELQCRADGGL
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]