Click here to switch to the map view.

The map label for this gene is smpA [H]

Identifier: 167623280

GI number: 167623280

Start: 1621862

End: 1622356

Strand: Reverse

Name: smpA [H]

Synonym: Shal_1348

Alternate gene names: 167623280

Gene position: 1622356-1621862 (Counterclockwise)

Preceding gene: 167623286

Following gene: 167623277

Centisome position: 31.04

GC content: 43.23

Gene sequence:

>495_bases
ATGACAATTAAAAAGAAAAGTCTTACCCTTTTGGGCGCTACTGCGCTCTCGTTATCACTTAGTGCTTGTAGTGTATTTGA
CTGGTTGATCTATAAACCTGATATCCCTCAGGGTAACTATATGGAAAAGCAGCAAGTCGAAAAGTTGCGGATCGATATGA
CTAAAGAGCAGGTAGAATACGTGCTTGGACGTCCGGTTCTACGCGACAGCTTCTCTGACGATACTTGGTATTATGTCTAC
CACTATAAGAGTGGCCGTGACGCCAGCATTATTCATAAAGAACTTATTCTTAACTTTAATGGCGATATGCTAGCTGAAGC
GAAAGGTGATTATGAGCTTAGCCCTGACTTTGGGATCCCGCTTGAAGAAAGCAAGTTACCAGAGGTCAACACCCCTGATG
GTGATCCTTTGATCCCAGAGCAACGCCCTCAAGCTAAGCCTTTGATTGAAGAGAAACAAACTCAACCAGAGACCCTCTCT
GAAAAGTTTGAATAA

Upstream 100 bases:

>100_bases
AAGAATTACGCCCTAAGCACGCCTTGACGCAATAGCTCTTGTCATGAGGGGGACTGCTTGGGTATTATGACCGACAGATT
TTGATGAAGTAGCGCATTCA

Downstream 100 bases:

>100_bases
CTGACTTTAAACAGATTAACTCAAATAAAATGGCGAGTTCCTATTGGAGACTCGCCATTTTTTATACATCTTATTTGCTA
AATCTTACTGTCGATTTATT

Product: SmpA/OmlA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTIKKKSLTLLGATALSLSLSACSVFDWLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEYVLGRPVLRDSFSDDTWYYVY
HYKSGRDASIIHKELILNFNGDMLAEAKGDYELSPDFGIPLEESKLPEVNTPDGDPLIPEQRPQAKPLIEEKQTQPETLS
EKFE

Sequences:

>Translated_164_residues
MTIKKKSLTLLGATALSLSLSACSVFDWLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEYVLGRPVLRDSFSDDTWYYVY
HYKSGRDASIIHKELILNFNGDMLAEAKGDYELSPDFGIPLEESKLPEVNTPDGDPLIPEQRPQAKPLIEEKQTQPETLS
EKFE
>Mature_163_residues
TIKKKSLTLLGATALSLSLSACSVFDWLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEYVLGRPVLRDSFSDDTWYYVYH
YKSGRDASIIHKELILNFNGDMLAEAKGDYELSPDFGIPLEESKLPEVNTPDGDPLIPEQRPQAKPLIEEKQTQPETLSE
KFE

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=98, Percent_Identity=38.7755102040816, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 18787; Mature: 18655

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKKKSLTLLGATALSLSLSACSVFDWLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEY
CCCCCCCEEEEEHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHH
VLGRPVLRDSFSDDTWYYVYHYKSGRDASIIHKELILNFNGDMLAEAKGDYELSPDFGIP
HHCCCHHHCCCCCCEEEEEEEECCCCCHHHEEEEHEEECCCCEEECCCCCEEECCCCCCC
LEESKLPEVNTPDGDPLIPEQRPQAKPLIEEKQTQPETLSEKFE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
TIKKKSLTLLGATALSLSLSACSVFDWLIYKPDIPQGNYMEKQQVEKLRIDMTKEQVEY
CCCCCCEEEEEHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHH
VLGRPVLRDSFSDDTWYYVYHYKSGRDASIIHKELILNFNGDMLAEAKGDYELSPDFGIP
HHCCCHHHCCCCCCEEEEEEEECCCCCHHHEEEEHEEECCCCEEECCCCCEEECCCCCCC
LEESKLPEVNTPDGDPLIPEQRPQAKPLIEEKQTQPETLSEKFE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA