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The map label for this gene is nusB

Identifier: 167623143

GI number: 167623143

Start: 1468778

End: 1469185

Strand: Direct

Name: nusB

Synonym: Shal_1209

Alternate gene names: 167623143

Gene position: 1468778-1469185 (Clockwise)

Preceding gene: 167623142

Following gene: 167623144

Centisome position: 28.1

GC content: 44.61

Gene sequence:

>408_bases
ATGAAGCCTTCAGAGCGCCGTAAGGCCCGCCGTTTAGCCGTTCAGGCCATTTACTCATGGCAGCTAAGTGGTAACAATAT
TGCTGATGTTGAGCATGAGTTTCTAACTGAACAAGATGTTGCTGGCGTTGATATCGCTTACTTTCGTGAGCTATTAGGTG
GCGTTGCAACAAAGAAAAGTCAATTAGATGAGTTAATCACTCCATTTTTGACTCGTCCACTCGACGAAGTGGATCCAGTA
GAAAAAGCGATTGTACGCATAGCAACTTATGAACTGACATTCCGCAAGGATGTGCCTTATAAGGTAGCGATTAACGAAGC
TATCGAGCTTGCAAAAGCATTCGGCGCAGAAGATGGACATAAGTTTGTTAACGGCATTCTCGACAAGCTGGTAGCACGCA
ATAGATAG

Upstream 100 bases:

>100_bases
CTAAAGCAGGTAACAAAGGCGGCGAAGCTGCACTTGGTCTGCTAGAAATGGTTAACGTTCTGCAAGCACTTGAAGAACAG
CTGTAATTTAGGACAATTTA

Downstream 100 bases:

>100_bases
TAGAAACGGCATCCTAGGATGCCGTTTTTGTTATACCCGATGGGGAGACAAGAGCAGTCCGCGCATTTTCACTCAGAGCA
AAGCCGCTGTAATTTCTTAA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKSQLDELITPFLTRPLDEVDPV
EKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGHKFVNGILDKLVARNR

Sequences:

>Translated_135_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKSQLDELITPFLTRPLDEVDPV
EKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGHKFVNGILDKLVARNR
>Mature_135_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKSQLDELITPFLTRPLDEVDPV
EKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGHKFVNGILDKLVARNR

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=129, Percent_Identity=69.7674418604651, Blast_Score=179, Evalue=6e-47,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_SHEHH (B0TJZ1)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001673437.1
- ProteinModelPortal:   B0TJZ1
- SMR:   B0TJZ1
- GeneID:   5904291
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_1209
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- ProtClustDB:   PRK00202
- BioCyc:   SHAL458817:SHAL_1209-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15243; Mature: 15243

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
QLDELITPFLTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGH
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHH
KFVNGILDKLVARNR
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
QLDELITPFLTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGH
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHH
KFVNGILDKLVARNR
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA