| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623122
Identifier: 167623122
GI number: 167623122
Start: 1439535
End: 1439744
Strand: Reverse
Name: 167623122
Synonym: Shal_1188
Alternate gene names: NA
Gene position: 1439744-1439535 (Counterclockwise)
Preceding gene: 167623123
Following gene: 167623120
Centisome position: 27.54
GC content: 46.19
Gene sequence:
>210_bases ATGAAACAGATAAGTTTAGTTGCTGCACTATTATGTAGCTTAATGATCTCAGGCTGCGCAGAGCTAAAAGACGCTGGACG ACAAATTGGCCACACAACGAAGGAAGTGACGACAGATATTGGTCATGCGACTCGAGACACTACCCGCGCCATTGGCCATG CCTCTAGAGATGCCGTCAAATCAGTCAAGGAAGATCTTAGCGAAGATTAA
Upstream 100 bases:
>100_bases ATAGGTATTTGGATTTTGATAACGTGATGTTCTGCCCTAGCGCAATTTAAACAATACTGGCACTATGTCAGCAATATGAT AAGAAAGAGACGACTCCTCA
Downstream 100 bases:
>100_bases ATCCGGTTGATAATAACTGCCAACTCAAGTTTGTGACTAAAAACAAAAACCTAGGCTTAGCCTAGGTTTTTTATATTTAA GATAAGTAATCGCGGATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 69; Mature: 69
Protein sequence:
>69_residues MKQISLVAALLCSLMISGCAELKDAGRQIGHTTKEVTTDIGHATRDTTRAIGHASRDAVKSVKEDLSED
Sequences:
>Translated_69_residues MKQISLVAALLCSLMISGCAELKDAGRQIGHTTKEVTTDIGHATRDTTRAIGHASRDAVKSVKEDLSED >Mature_69_residues MKQISLVAALLCSLMISGCAELKDAGRQIGHTTKEVTTDIGHATRDTTRAIGHASRDAVKSVKEDLSED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7352; Mature: 7352
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQISLVAALLCSLMISGCAELKDAGRQIGHTTKEVTTDIGHATRDTTRAIGHASRDAVK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVKEDLSED HHHHHHCCC >Mature Secondary Structure MKQISLVAALLCSLMISGCAELKDAGRQIGHTTKEVTTDIGHATRDTTRAIGHASRDAVK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVKEDLSED HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA