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The map label for this gene is ybhD [H]

Identifier: 167623115

GI number: 167623115

Start: 1432061

End: 1432939

Strand: Reverse

Name: ybhD [H]

Synonym: Shal_1181

Alternate gene names: 167623115

Gene position: 1432939-1432061 (Counterclockwise)

Preceding gene: 167623120

Following gene: 167623113

Centisome position: 27.41

GC content: 43.34

Gene sequence:

>879_bases
ATGTTGACCATCGAACAGCTTTATTCATTTGTAACGACCGTCGAAACCGGTTCCTTCTCTGCCGCAGCCAGAAAACTTGG
TAAGGTTCAATCTGCAGTTAGTCAGCACATTATCAATCTAGAGATTGATACCAATCAGACGCTATTCGATAGAAGTCACC
GCTACCCCACACTCACTCGAGCTGGGGAGCAACTGCTGCCGCAAGCTAAAGCCGTTATTGCCCAGCATCAACGCCTAAAT
CAACAAGTACTCGCACTTGAGAGCCAAGCAGATTTAAAATTAACATTAGCTGTCGATGAAGGGATCCCTTACCAGCGCCT
TATTCCGATAATCACTCAATTGTCTAGCCAATATCCCGAATGTGAACTTGAGCTTTTATGTGCATCGAGTGTAGACATCA
TTCACTTAGTGAACACCAAACGAGCCCATTTAGGCATTGTTTTTAGTGAATTAAGTTACCCTGAGAGTTTGGATTTTGAA
TCTATTGGCACTGTAGAATTTGAGCTCCTTGTCAATTCCAAACACCCATTGGCGAATGAAACGTCATCTCACATCGACAT
CCTTAAACTGCATCGCCAACTCATGATTGGCTCTAAAGAGAATCAAAAGGGCTGGTTCAACACACCACTCTCTCCCGATG
TATGGCATGCAGATAACTACTATATGTTGCTCGAACTAACTAAAGCTGGATTTGGCTGGGCCTTGTTACCACTGCATCTA
TGTGAGTCTGCCATAGCCACAAAACAGTTGTGTAAACTGCAAATAGACTTTGAGCAATTAGGATGGCAGGCCAATGTTGA
TGTCATTCAACATAAAGGCCGACTTGATAATCAATTCAATCGCCAGATTAGAGTGTTAATGCGCGGCTTACTTAACTAG

Upstream 100 bases:

>100_bases
TATCTTTAATAGTCATGATAAATAGCCCTAAAGTTAAGTTGCAGCTATTATCATCTTTAATTACGATACTTAAAAATTAG
ATACCATCACCTTTACTGAT

Downstream 100 bases:

>100_bases
CAAAATCTTGCTGCACTATGTTGTTAGTAAAGGGTCACATGGAAACCCAATGGAACCTGCACTGCTCTACTAGAAGATAA
AGAGCAATGTAAAATGCTAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MLTIEQLYSFVTTVETGSFSAAARKLGKVQSAVSQHIINLEIDTNQTLFDRSHRYPTLTRAGEQLLPQAKAVIAQHQRLN
QQVLALESQADLKLTLAVDEGIPYQRLIPIITQLSSQYPECELELLCASSVDIIHLVNTKRAHLGIVFSELSYPESLDFE
SIGTVEFELLVNSKHPLANETSSHIDILKLHRQLMIGSKENQKGWFNTPLSPDVWHADNYYMLLELTKAGFGWALLPLHL
CESAIATKQLCKLQIDFEQLGWQANVDVIQHKGRLDNQFNRQIRVLMRGLLN

Sequences:

>Translated_292_residues
MLTIEQLYSFVTTVETGSFSAAARKLGKVQSAVSQHIINLEIDTNQTLFDRSHRYPTLTRAGEQLLPQAKAVIAQHQRLN
QQVLALESQADLKLTLAVDEGIPYQRLIPIITQLSSQYPECELELLCASSVDIIHLVNTKRAHLGIVFSELSYPESLDFE
SIGTVEFELLVNSKHPLANETSSHIDILKLHRQLMIGSKENQKGWFNTPLSPDVWHADNYYMLLELTKAGFGWALLPLHL
CESAIATKQLCKLQIDFEQLGWQANVDVIQHKGRLDNQFNRQIRVLMRGLLN
>Mature_292_residues
MLTIEQLYSFVTTVETGSFSAAARKLGKVQSAVSQHIINLEIDTNQTLFDRSHRYPTLTRAGEQLLPQAKAVIAQHQRLN
QQVLALESQADLKLTLAVDEGIPYQRLIPIITQLSSQYPECELELLCASSVDIIHLVNTKRAHLGIVFSELSYPESLDFE
SIGTVEFELLVNSKHPLANETSSHIDILKLHRQLMIGSKENQKGWFNTPLSPDVWHADNYYMLLELTKAGFGWALLPLHL
CESAIATKQLCKLQIDFEQLGWQANVDVIQHKGRLDNQFNRQIRVLMRGLLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=240, Percent_Identity=25, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082024, Length=245, Percent_Identity=26.1224489795918, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786401, Length=140, Percent_Identity=32.8571428571429, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786713, Length=263, Percent_Identity=24.7148288973384, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789440, Length=132, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786508, Length=271, Percent_Identity=22.5092250922509, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33037; Mature: 33037

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIEQLYSFVTTVETGSFSAAARKLGKVQSAVSQHIINLEIDTNQTLFDRSHRYPTLTR
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHCCCCCCCHHH
AGEQLLPQAKAVIAQHQRLNQQVLALESQADLKLTLAVDEGIPYQRLIPIITQLSSQYPE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC
CELELLCASSVDIIHLVNTKRAHLGIVFSELSYPESLDFESIGTVEFELLVNSKHPLANE
CEEEEEECCCCCEEEEECCCCHHHEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
TSSHIDILKLHRQLMIGSKENQKGWFNTPLSPDVWHADNYYMLLELTKAGFGWALLPLHL
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCHHHHHHHH
CESAIATKQLCKLQIDFEQLGWQANVDVIQHKGRLDNQFNRQIRVLMRGLLN
HHHHHHHHHHHHEEECHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTIEQLYSFVTTVETGSFSAAARKLGKVQSAVSQHIINLEIDTNQTLFDRSHRYPTLTR
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHCCCCCCCHHH
AGEQLLPQAKAVIAQHQRLNQQVLALESQADLKLTLAVDEGIPYQRLIPIITQLSSQYPE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC
CELELLCASSVDIIHLVNTKRAHLGIVFSELSYPESLDFESIGTVEFELLVNSKHPLANE
CEEEEEECCCCCEEEEECCCCHHHEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
TSSHIDILKLHRQLMIGSKENQKGWFNTPLSPDVWHADNYYMLLELTKAGFGWALLPLHL
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCHHHHHHHH
CESAIATKQLCKLQIDFEQLGWQANVDVIQHKGRLDNQFNRQIRVLMRGLLN
HHHHHHHHHHHHEEECHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]