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The map label for this gene is yqgF [C]

Identifier: 167623110

GI number: 167623110

Start: 1428823

End: 1429245

Strand: Reverse

Name: yqgF [C]

Synonym: Shal_1176

Alternate gene names: 167623110

Gene position: 1429245-1428823 (Counterclockwise)

Preceding gene: 167623111

Following gene: 167623106

Centisome position: 27.34

GC content: 48.23

Gene sequence:

>423_bases
ATGGGCGATAAAAGCGTCTTAGGATTTGATTACGGTACCAAAAGTATTGGTATTGCCATTGGGCAAGAGCTCACGGCGAG
TGCACGACCACTATTATCGATTAAAGCGGTCGATGGTATTCCTAAATGGGAAGAGATTGGCGCGCTTATCACCGAGTGGA
AACCGGACTTAGTTGTAGTCGGTCTGCCACTCAATATGGATGGCACAGAACAAGAGATGACTCAAAGAGCGAGAAAGTTC
GCTAATCGGATCAGTGGCCGTTTTGGGGTAAAGGTAGCGACTCAAGATGAGCGCCTCACCACTGCTGACGCCAAAGCGAG
ACTATTTGAGATGGGTGGCTACAAGGCTCTCACCAAGGGCCAAGTTGATGCCATGTCAGCGGTATTGATTGTAGAGAGTT
ACTTCGAGAATCAATACCAGTAG

Upstream 100 bases:

>100_bases
CTCGGTTTCGATATTTGGCAGCTATCTAACCTTACTGGCCATGCTTAATTGCCGTTACAGGCGCTATGGCGGCATAAAAC
ACGAATAGGAAATAACTGAG

Downstream 100 bases:

>100_bases
CGCCCCTAAAGACTTAATAATTAAGGGAGCCACTATTTGCATAGTGGCTCCCTTTTCTCACTAAGTAGACAGCCTAAACA
TAAGACTTAGCTATATGACT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MGDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGLPLNMDGTEQEMTQRARKF
ANRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKGQVDAMSAVLIVESYFENQYQ

Sequences:

>Translated_140_residues
MGDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGLPLNMDGTEQEMTQRARKF
ANRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKGQVDAMSAVLIVESYFENQYQ
>Mature_139_residues
GDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGLPLNMDGTEQEMTQRARKFA
NRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKGQVDAMSAVLIVESYFENQYQ

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=63.7037037037037, Blast_Score=189, Evalue=8e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15331; Mature: 15200

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVV
CCCCCEEEECCCCCEEEEEECCHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEE
GLPLNMDGTEQEMTQRARKFANRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKG
EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCCCCEEECCC
QVDAMSAVLIVESYFENQYQ
CHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVV
CCCCEEEECCCCCEEEEEECCHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEE
GLPLNMDGTEQEMTQRARKFANRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKG
EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCCCCEEECCC
QVDAMSAVLIVESYFENQYQ
CHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]