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The map label for this gene is yggS [C]

Identifier: 167623106

GI number: 167623106

Start: 1424676

End: 1425377

Strand: Reverse

Name: yggS [C]

Synonym: Shal_1172

Alternate gene names: 167623106

Gene position: 1425377-1424676 (Counterclockwise)

Preceding gene: 167623110

Following gene: 167623105

Centisome position: 27.27

GC content: 46.72

Gene sequence:

>702_bases
ATGACAACAATAACAGACAGACTCGCTATCGCCCAGCATCGAATCGCTCAAGCGGCGCAAAACTCATCTCGCCGAGCAGA
AGATATACAACTGCTTGCGGTGAGCAAAACAAAACCCAATAGCCAAATCATAGAAGCCTACCATGCGGGTCAACGCCGCT
TCGGTGAAAACTATGTACAAGAGGGCGAATCTAAGGTTAATGCACTCAGTCAAGAGTTCCCAGATATTGAGTGGCACTTT
ATCGGTCCATTGCAATCAAATAAGAGCAAGGTGGTCGCGACACTATTTGATTGGATGCATACCGTCGAGCGTGAAAAAAT
TGCTCAGAGGCTTAATGAGCAACGTCCTGAATCAATGCCAGCTCTCAATGTATGCATTCAAGTCAACATTAGCCAAGAGC
AAAGTAAATCAGGTGTGCCAGCCTGCGAGGTATTAGCGCTTGCAGATAAAATTGCACTATTACCCAAACTGACATTACGT
GGCTTAATGGCTATTCCCTCAGCCGATGTCGATGAACTCACAGCCATACAAGAACTTGCAGCCTTACAGTCACTTTACAA
CGAACTCGCTCAGCGCTTCGATAGTGTCGATACCTTGTCAGTAGGCATGAGTAATGACCTTGAGCTAGCGGTTGCCCATG
GCTCAACCATGGTGCGTATTGGTAGCGCTATCTTTGGAGAGCGTGATTACAGCAAGCTATAG

Upstream 100 bases:

>100_bases
GCTGAAAGGTGTAGATCTGACGCATTGTGTTTTACACTAAAGGCAAGTAACTCTGTGATTTCCATAGTTTGGGATATCCA
TTCAACCAAAAACTTACAAC

Downstream 100 bases:

>100_bases
CTAGGCTAAATACAGTTCCAATATGAAAATTGTTTAATACCATAAATTTTGTATTGCTCTTATCCGCCCAGATATTAACA
GGTAAAATAGTCTTTATTTA

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTTITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQEGESKVNALSQEFPDIEWHF
IGPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMPALNVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLR
GLMAIPSADVDELTAIQELAALQSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKL

Sequences:

>Translated_233_residues
MTTITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQEGESKVNALSQEFPDIEWHF
IGPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMPALNVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLR
GLMAIPSADVDELTAIQELAALQSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKL
>Mature_232_residues
TTITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQEGESKVNALSQEFPDIEWHFI
GPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMPALNVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLRG
LMAIPSADVDELTAIQELAALQSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=237, Percent_Identity=45.1476793248945, Blast_Score=149, Evalue=3e-36,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=53.6480686695279, Blast_Score=245, Evalue=1e-66,
Organism=Caenorhabditis elegans, GI17533025, Length=223, Percent_Identity=37.6681614349776, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=213, Percent_Identity=38.4976525821596, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45550861, Length=236, Percent_Identity=38.5593220338983, Blast_Score=134, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25789; Mature: 25657

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQ
CCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EGESKVNALSQEFPDIEWHFIGPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMP
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ALNVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLRGLMAIPSADVDELTAIQELA
CEEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ALQSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKL
HHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQ
CCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EGESKVNALSQEFPDIEWHFIGPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMP
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ALNVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLRGLMAIPSADVDELTAIQELA
CEEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ALQSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKL
HHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]