| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fepA [C]
Identifier: 167623079
GI number: 167623079
Start: 1388622
End: 1391249
Strand: Direct
Name: fepA [C]
Synonym: Shal_1145
Alternate gene names: 167623079
Gene position: 1388622-1391249 (Clockwise)
Preceding gene: 167623077
Following gene: 167623080
Centisome position: 26.57
GC content: 45.21
Gene sequence:
>2628_bases ATGCGACCATCTACCTTTAAGAAAAGTGTACTAGCTACAAATATCGCGCTGCTGATGAGTGGAGCAATGTCAGTTTCTGC TATGGCAGCGGAGGCTGATGCGAAAACCGCAGCGGCAGACGAAAACATTGAGAAAATTGAAGTTCGCGGTATGCGCGCCT CAATGAAAGCGTCAATCAATGAAAAAAGATTTTCGGATTCAGTTGTTGATGCAATAACGGCTGAAGATATTGGTAAGTTT CCCGATGGCGATGTGGGTGAGTCACTCGCTCGAATCCCTGGCGTTACCGTTAACCGTCAGTTTGGCCAAGGTCAACAAGT TTCCATTCGTGGCGCATCGAGCCAGCTAACCCGTACCTTATTAAATGGCCACGCTGTTGCATCAACAGGTTGGTTCGATC AGCAAGCTATTGACCGTAGCTTTAACTATTCACTACTACCGCCTGAGATGGTAAGTGGTATTGAGGTTTACAAGTCATCC CAAGCAGACCTTCCAGAAGGTGGTATTGGTGGTACGGTAATCGTTAAAACTCGTAAACCACTGGATCTTGATGCAAATAC TGTTTTTGTTAGTGCAAAAGGCGATTACGGTACGATTTCTGAGAGTACCGACCCTGAGCTTTCAGGTCTTTATAGCTGGA AAAACGATAACGAAAACTTCGGTATATTAGTCTCTGCAGCGGGCTCTGAAACTGATTACCAACGCAACGGTATTGAGACT CTGCTTGGTTGGGGTGAGATAGTTCCGACAACGTTCCAACAAGATCGTAAGCGTACCGCCATCAATGTGGCTGCGCAGTA TCGTCCAACCGATGCGCTAGAGTTTGGTGTGACTTATACCGGCTTAGAGATGAAAGCAAATAATGCCAATACCTCTATCT TCCTATTCCCTACTCAGCAAGGCGAAAATACTTGTAATCAAACAAATGCCGCCGGCGTCTGTACTGATATTACCCATACT GGTGAAGGTGGATTTGCATGGGCTCAAACCTGGGCGCGTAAAGCAAAAATGACTTCAGATACCATTGATTTTGATTTCAA CTATGAAGCAGACAACTTTACTGTTGATGGCCGCGTTGGTAACACTAAATCAGATGGTGGTACTAGCTTAACCTCTAACT ACGGTGGCTCTATCGGCCAACCTGGTGATTTTGCTGGTCATTATGATGCGACTGGTAAAATTATTAATATCGATATTGCC AATAAAGACTTTGATGCTGGTGATTTTAATGGCGACCTGTCTACAGCCGCATGGGCATTGAAGAAGCAGCCAAACAGCGA TGAAGAAACCTATGCCGATTTAAACTTCACAATCCCTGTAGAGTTAGGTGCGATTACCTCATTTAAGACCGGCGTTCGTT ATGCTGATCATGATGTAACTCAGCAAACTGATATTGCAACTGTCGGTGACATTGCAGTGCGTGATGCATCATATTATTAC GATGGCACCATCTCATCAGGTGCGGGCTTTACTCTGCCAAAACCCAACTTTGATGCAATGATCAACGATGCGAATGCCGC TATTACCGGTTTTGAGCGTGATAAGTCGGGTTACGGTACATTGAATGAGAAAAACTTCTCTATGTACGCCATGGCAACGT TCCAGTCTGAAGGTATTCGCGGTAACGTCGGTCTACGCTATGTGTCTAGCGATGTTAAGTCTGATTATTATGCATTAAGT AATACCGGCGAGTTTGCAGATAACCTCAGTACTGATAAAGCCAGCTACAGTGATGTATTACCAAGCATTAACATTGCCTT TGATTTAACCTCAGATTTAATTTTACGTACAACCGCCGCTCAGGTGATGTCACGCCCTAACTACTCTGAGTTGTTTGCGA CATCGACACTGCCAGGTCTTAATGACGGAACGCCTGGTAACGAAAAGTTAAATCGTGGTTCTGTCTCACTTGACCCATTT AAAGCCACTCAAGCGGATGTGAGTCTTGAGTGGTACTTTGGTGGTGAAGGTCTAGCTGCAATTACCTACTTCATTAAAGA TGTTAATTCGTTTATCTCTACTCGCCAGAAGCTTAACCAGCAGATTGGAATCGAAGATAATGATTTGATAGCTCAAGGTG GCAGCACTTGCGGTGATGGAGTTTACGATTGCTGGACAGTGAGTGAGAAGTACAATGCTGAAGGTGGTCGCATCGAAGGT GTTGAACTACAACTTCAGGACTCTTTCGATAATGGTCTAGGCTACTCGGCGAACTATACTTTTGCTGATGCTGCATCTCC ATCAGAAAACTACCCAGACCATGTGGGTGTGTTCTCTGATTCATCTAAGCACACAGTTAACTTAGTCGGTTTCTATGAGA TGGACTCATTCTCCGCACGTCTTGCCTATAACTGGCGCAGTGAGTACATGATGCGTGAGCTGCCAGGTTTCTACGGCAAC CGTCAGCACGAAGACTATGGCACACTTGATTTAAGTGCATCATACAGCGTAACAGAGTGGATGGACGTGACTTTCGAAGC TGTTAACCTGACAGAAGAAGATAGCGTTCAAACGGGTGTAGCTGCAGCAGATAACCCTGATGTTATCTCTGAGTTTAAGG CTGACTACCCAGTGTGGAGCTTTGAAGGCGAAGCTCGCTACAAGGTTGGTGTAGCATTCCGCTTCTAG
Upstream 100 bases:
>100_bases ATTGTGTAATGTTTGCCCTAGACATGACAGCGTTGTCATTCCGCTTCTGGAATGGTTATGGAAATAAAAAAAAGATAATA AGTTATGGAAGGGAAACGAG
Downstream 100 bases:
>100_bases TCAATAAAATATAGTCGTAACCTAAAAGCCCAGCATTTGCTGGGCTTTTTATTGAAAATATAAAATCAGTTAACGCTAAT TAAACTCAGTGGCCCTTTTC
Product: TonB-dependent receptor plug
Products: NA
Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Plug; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Outer Membrane Receptor Protein; NB-Dependent Outer Membrane Receptor; NB-Dependent Receptor Subfamily Protein; NB-Dependent Receptor-Like Protein; Nucleoside Diphosphate Kinase; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Protein; Crossover Junction Endodeoxyribonuclease RuvC; Outer Membrane Protein; NB Dependent Receptor; Peptidase; NB-Dependent Maltose Outer Membrane Transporter MalA; Outer Membrane Insertion C-Terminal Signal; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 1-(5-Phosphoribosyl)-5-; Rhodanese-Like Protein; NB-Dependent Receptor Plug Domain; NB Dependent Receptor-Related Protein; 3-Dehydroquinate Synthase; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 875; Mature: 875
Protein sequence:
>875_residues MRPSTFKKSVLATNIALLMSGAMSVSAMAAEADAKTAAADENIEKIEVRGMRASMKASINEKRFSDSVVDAITAEDIGKF PDGDVGESLARIPGVTVNRQFGQGQQVSIRGASSQLTRTLLNGHAVASTGWFDQQAIDRSFNYSLLPPEMVSGIEVYKSS QADLPEGGIGGTVIVKTRKPLDLDANTVFVSAKGDYGTISESTDPELSGLYSWKNDNENFGILVSAAGSETDYQRNGIET LLGWGEIVPTTFQQDRKRTAINVAAQYRPTDALEFGVTYTGLEMKANNANTSIFLFPTQQGENTCNQTNAAGVCTDITHT GEGGFAWAQTWARKAKMTSDTIDFDFNYEADNFTVDGRVGNTKSDGGTSLTSNYGGSIGQPGDFAGHYDATGKIINIDIA NKDFDAGDFNGDLSTAAWALKKQPNSDEETYADLNFTIPVELGAITSFKTGVRYADHDVTQQTDIATVGDIAVRDASYYY DGTISSGAGFTLPKPNFDAMINDANAAITGFERDKSGYGTLNEKNFSMYAMATFQSEGIRGNVGLRYVSSDVKSDYYALS NTGEFADNLSTDKASYSDVLPSINIAFDLTSDLILRTTAAQVMSRPNYSELFATSTLPGLNDGTPGNEKLNRGSVSLDPF KATQADVSLEWYFGGEGLAAITYFIKDVNSFISTRQKLNQQIGIEDNDLIAQGGSTCGDGVYDCWTVSEKYNAEGGRIEG VELQLQDSFDNGLGYSANYTFADAASPSENYPDHVGVFSDSSKHTVNLVGFYEMDSFSARLAYNWRSEYMMRELPGFYGN RQHEDYGTLDLSASYSVTEWMDVTFEAVNLTEEDSVQTGVAAADNPDVISEFKADYPVWSFEGEARYKVGVAFRF
Sequences:
>Translated_875_residues MRPSTFKKSVLATNIALLMSGAMSVSAMAAEADAKTAAADENIEKIEVRGMRASMKASINEKRFSDSVVDAITAEDIGKF PDGDVGESLARIPGVTVNRQFGQGQQVSIRGASSQLTRTLLNGHAVASTGWFDQQAIDRSFNYSLLPPEMVSGIEVYKSS QADLPEGGIGGTVIVKTRKPLDLDANTVFVSAKGDYGTISESTDPELSGLYSWKNDNENFGILVSAAGSETDYQRNGIET LLGWGEIVPTTFQQDRKRTAINVAAQYRPTDALEFGVTYTGLEMKANNANTSIFLFPTQQGENTCNQTNAAGVCTDITHT GEGGFAWAQTWARKAKMTSDTIDFDFNYEADNFTVDGRVGNTKSDGGTSLTSNYGGSIGQPGDFAGHYDATGKIINIDIA NKDFDAGDFNGDLSTAAWALKKQPNSDEETYADLNFTIPVELGAITSFKTGVRYADHDVTQQTDIATVGDIAVRDASYYY DGTISSGAGFTLPKPNFDAMINDANAAITGFERDKSGYGTLNEKNFSMYAMATFQSEGIRGNVGLRYVSSDVKSDYYALS NTGEFADNLSTDKASYSDVLPSINIAFDLTSDLILRTTAAQVMSRPNYSELFATSTLPGLNDGTPGNEKLNRGSVSLDPF KATQADVSLEWYFGGEGLAAITYFIKDVNSFISTRQKLNQQIGIEDNDLIAQGGSTCGDGVYDCWTVSEKYNAEGGRIEG VELQLQDSFDNGLGYSANYTFADAASPSENYPDHVGVFSDSSKHTVNLVGFYEMDSFSARLAYNWRSEYMMRELPGFYGN RQHEDYGTLDLSASYSVTEWMDVTFEAVNLTEEDSVQTGVAAADNPDVISEFKADYPVWSFEGEARYKVGVAFRF >Mature_875_residues MRPSTFKKSVLATNIALLMSGAMSVSAMAAEADAKTAAADENIEKIEVRGMRASMKASINEKRFSDSVVDAITAEDIGKF PDGDVGESLARIPGVTVNRQFGQGQQVSIRGASSQLTRTLLNGHAVASTGWFDQQAIDRSFNYSLLPPEMVSGIEVYKSS QADLPEGGIGGTVIVKTRKPLDLDANTVFVSAKGDYGTISESTDPELSGLYSWKNDNENFGILVSAAGSETDYQRNGIET LLGWGEIVPTTFQQDRKRTAINVAAQYRPTDALEFGVTYTGLEMKANNANTSIFLFPTQQGENTCNQTNAAGVCTDITHT GEGGFAWAQTWARKAKMTSDTIDFDFNYEADNFTVDGRVGNTKSDGGTSLTSNYGGSIGQPGDFAGHYDATGKIINIDIA NKDFDAGDFNGDLSTAAWALKKQPNSDEETYADLNFTIPVELGAITSFKTGVRYADHDVTQQTDIATVGDIAVRDASYYY DGTISSGAGFTLPKPNFDAMINDANAAITGFERDKSGYGTLNEKNFSMYAMATFQSEGIRGNVGLRYVSSDVKSDYYALS NTGEFADNLSTDKASYSDVLPSINIAFDLTSDLILRTTAAQVMSRPNYSELFATSTLPGLNDGTPGNEKLNRGSVSLDPF KATQADVSLEWYFGGEGLAAITYFIKDVNSFISTRQKLNQQIGIEDNDLIAQGGSTCGDGVYDCWTVSEKYNAEGGRIEG VELQLQDSFDNGLGYSANYTFADAASPSENYPDHVGVFSDSSKHTVNLVGFYEMDSFSARLAYNWRSEYMMRELPGFYGN RQHEDYGTLDLSASYSVTEWMDVTFEAVNLTEEDSVQTGVAAADNPDVISEFKADYPVWSFEGEARYKVGVAFRF
Specific function: This Protein Is Involved In The Initial Step Of Iron Uptake By Binding Ferrienterobactin (Fe-Ent), An Iron Chelatin Siderophore That Allows E.Coli To Extract Iron From The Environment. Fepa Also Acts As A Receptor For Colicins B And D. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94871; Mature: 94871
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSTFKKSVLATNIALLMSGAMSVSAMAAEADAKTAAADENIEKIEVRGMRASMKASIN CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCCCEEEEEECCHHHHHHHCC EKRFSDSVVDAITAEDIGKFPDGDVGESLARIPGVTVNRQFGQGQQVSIRGASSQLTRTL HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEECCCCCCCEEEEECCHHHHHHHH LNGHAVASTGWFDQQAIDRSFNYSLLPPEMVSGIEVYKSSQADLPEGGIGGTVIVKTRKP HCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC LDLDANTVFVSAKGDYGTISESTDPELSGLYSWKNDNENFGILVSAAGSETDYQRNGIET CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHCCHHH LLGWGEIVPTTFQQDRKRTAINVAAQYRPTDALEFGVTYTGLEMKANNANTSIFLFPTQQ HHCCCCCCCCHHHHHHHCEEEEEEEECCCCCCEEECEEEEEEEEEECCCCEEEEEEECCC GENTCNQTNAAGVCTDITHTGEGGFAWAQTWARKAKMTSDTIDFDFNYEADNFTVDGRVG CCCCCCCCCCCCEEEECEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCC NTKSDGGTSLTSNYGGSIGQPGDFAGHYDATGKIINIDIANKDFDAGDFNGDLSTAAWAL CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH KKQPNSDEETYADLNFTIPVELGAITSFKTGVRYADHDVTQQTDIATVGDIAVRDASYYY HCCCCCCCCEEEEEEEEEEEEECCEEHHHCCCEECCCCCCCCCCCEEECCEEEECCCEEE DGTISSGAGFTLPKPNFDAMINDANAAITGFERDKSGYGTLNEKNFSMYAMATFQSEGIR CCEECCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC GNVGLRYVSSDVKSDYYALSNTGEFADNLSTDKASYSDVLPSINIAFDLTSDLILRTTAA CCCEEEEECCCCCCCEEEECCCCHHHHCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHH QVMSRPNYSELFATSTLPGLNDGTPGNEKLNRGSVSLDPFKATQADVSLEWYFGGEGLAA HHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCHHH ITYFIKDVNSFISTRQKLNQQIGIEDNDLIAQGGSTCGDGVYDCWTVSEKYNAEGGRIEG HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECHHCCCCCCEEEE VELQLQDSFDNGLGYSANYTFADAASPSENYPDHVGVFSDSSKHTVNLVGFYEMDSFSAR EEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCEE LAYNWRSEYMMRELPGFYGNRQHEDYGTLDLSASYSVTEWMDVTFEAVNLTEEDSVQTGV EEECHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEEEECCCCCCCCCCCC AAADNPDVISEFKADYPVWSFEGEARYKVGVAFRF CCCCCCHHHHHHCCCCCEEECCCCCEEEEEEEEEC >Mature Secondary Structure MRPSTFKKSVLATNIALLMSGAMSVSAMAAEADAKTAAADENIEKIEVRGMRASMKASIN CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCCCEEEEEECCHHHHHHHCC EKRFSDSVVDAITAEDIGKFPDGDVGESLARIPGVTVNRQFGQGQQVSIRGASSQLTRTL HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEECCCCCCCEEEEECCHHHHHHHH LNGHAVASTGWFDQQAIDRSFNYSLLPPEMVSGIEVYKSSQADLPEGGIGGTVIVKTRKP HCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC LDLDANTVFVSAKGDYGTISESTDPELSGLYSWKNDNENFGILVSAAGSETDYQRNGIET CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHCCHHH LLGWGEIVPTTFQQDRKRTAINVAAQYRPTDALEFGVTYTGLEMKANNANTSIFLFPTQQ HHCCCCCCCCHHHHHHHCEEEEEEEECCCCCCEEECEEEEEEEEEECCCCEEEEEEECCC GENTCNQTNAAGVCTDITHTGEGGFAWAQTWARKAKMTSDTIDFDFNYEADNFTVDGRVG CCCCCCCCCCCCEEEECEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCC NTKSDGGTSLTSNYGGSIGQPGDFAGHYDATGKIINIDIANKDFDAGDFNGDLSTAAWAL CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH KKQPNSDEETYADLNFTIPVELGAITSFKTGVRYADHDVTQQTDIATVGDIAVRDASYYY HCCCCCCCCEEEEEEEEEEEEECCEEHHHCCCEECCCCCCCCCCCEEECCEEEECCCEEE DGTISSGAGFTLPKPNFDAMINDANAAITGFERDKSGYGTLNEKNFSMYAMATFQSEGIR CCEECCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC GNVGLRYVSSDVKSDYYALSNTGEFADNLSTDKASYSDVLPSINIAFDLTSDLILRTTAA CCCEEEEECCCCCCCEEEECCCCHHHHCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHH QVMSRPNYSELFATSTLPGLNDGTPGNEKLNRGSVSLDPFKATQADVSLEWYFGGEGLAA HHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCHHH ITYFIKDVNSFISTRQKLNQQIGIEDNDLIAQGGSTCGDGVYDCWTVSEKYNAEGGRIEG HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECHHCCCCCCEEEE VELQLQDSFDNGLGYSANYTFADAASPSENYPDHVGVFSDSSKHTVNLVGFYEMDSFSAR EEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCEE LAYNWRSEYMMRELPGFYGNRQHEDYGTLDLSASYSVTEWMDVTFEAVNLTEEDSVQTGV EEECHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEEEECCCCCCCCCCCC AAADNPDVISEFKADYPVWSFEGEARYKVGVAFRF CCCCCCHHHHHHCCCCCEEECCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA