| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is ptsP [H]
Identifier: 167623002
GI number: 167623002
Start: 1306314
End: 1308548
Strand: Direct
Name: ptsP [H]
Synonym: Shal_1068
Alternate gene names: 167623002
Gene position: 1306314-1308548 (Clockwise)
Preceding gene: 167623001
Following gene: 167623003
Centisome position: 24.99
GC content: 45.59
Gene sequence:
>2235_bases GTGCTAAAAACACTGAGAGATATTACACAGGCAGTAGCGTCTTCACGCGATCTTCAATACGCGTTAGAGCTACTTGTTAC GCAAACCAAACAAGCTATGGCTACAGAGTGTTGCTCTATCTATATATTAGAGGAGCAACAACTCGTTCTTTCTGCAACGG ACGGCCTAGACCCTGCGGCTGTTAATCGTGTTAAACTCCCCGTTACACAAGGCTTAGTTGGCTTAGTTGCTCAGCGAGAA GAGGCAATTAACTTAGCCGATGCACCATCCCACCCTAGATTTAAACTACTCCCTGAAGTGGCTGAAGAAGCTTATAGTGC TTTTCTCGCAGTGCCAATCGTATATCAAAAGTCGGTTATTGGCGTTATCGTGGTTCAGCAAGTTCAAGCTCGTCAGTTTA GTGAGGGAGAAGAAGCCTTCTTAATGACGCTAGCCGCTCAGTTGGCTGTTGCAATTAAAGGGCTAACCCATAGAGCAAAG TCTAGCAGTAGCCTACAGCAGCGATATTATACTGGCACTCAAGCTTCAAAAGGCATTGCGATTGCAAAAGCTCTGATGTT GGGGGGGCAGATCTCGTTTGATCTTGCTTTGCAGCGTGCAAACTCAATAGAAGAGGAGGAGAAACGCCTTCAAGATGCGA TGAACCGCTGCAAAGATTTGCTCGTCGGTCTATCTCAGCGATTCGACAGGGAGAAAGATGAAGAAGCCGCATCGATTTTT AAAGCGCTGTTGTTATTGCTTGAGAAGGCCAGTTTGGGCGGTGAATACATTGAAGAGGTTAGAGCGGGTTGGAGTTCTGA AACCGCTGTTTGTCAGGTATCTAAGCGGTACATAGAACACTTTGGCTCGATGAGTGACCTTTATCTAAAAGAGCGAGCTA ATGATATTAGAGATCTCGGTCAGCGCGTTCTTAGGCAGTTGATCGAACCTGATAAGATTTTTTTAGAGCCAGAAACACCG GTGATCTTGATTACTCGTGAAGCCAGTACAACTCTGTTAGCAGAATTTCCTAGACAAAAGTTGGCGGGGATCGTAACCGA GCTTGGCGGCGCCAACTCTCATGCGGCTATTTTAGCTAGGGCGATGGGGGTACCTGCAATTATTGGTGTCGAAGGTATTT TAAGCGCTAATATCGAAAAGTCGCAGATCATTATCAATGCCAATCGTGGTCAGGTTATCATTGAACCTTCAGCGTTAGTA TTATCTGAGTATCGAAGCTTAATTGCGGCGCAAGAAGAGCAACAAAGACAATATGCGCAAGAGTTATCTCTTAAAGCGGT TACCCTCGATAACAAGCGCATTTATCTCTACATCAATAGTGGATTGTTGAGTAGTGTCGACTCTGAAACCGGTGCCGACT CTGATGGGATTGGGCTCTATCGCACCGAGATCCTGTTTATGCTCAAACAGTGCTTCCCTGGAGAAATAGAACAGCTAGAA ATTTATCGCAAGGTTTTAAAGGCGGCGGGTAATAAGCCTGTGGTGATGCGAACCCTTGATGTTGGAGGGGATAAACCGCT CGATTACTTCCCTATTATTGAAGATAACCCGTTTTTGGGCTGGCGTGGCATACGATTATCGCTGGATCATCCTGAGTTAT TCCTCGTTCAGCTTAGAGCAATGTTACAGGCGGCTATTGACACTGAGCAGCTGCATATATTACTGCCGATGGTCAGTAAT CTTGAAGAGATAGATTTATCATTGATCTATTTAGAGCAAGCTTGTCAAGAGCTGACTTCTGAGCTTGGCAAGAGCATTAC TATGCCTAAAGTGGGTATTATGCTCGAAGTACCAGTATTGTTGTATCAGCTAGATGAAGTGGCTAAACGTGTGGATTTTG TCTCTGTGGGATCGAACGATCTGACTCAGTACTTATTGGCTGTCGACCGCAATAACCCCAGTGTTAGCCCATTATTTGAT AGCTATCACCCTGGCGTACTCCGAGCGCTTAAATTTGCCGTCGAACGCTGTGGCGAGCATCAATTGCCGATTAGTGTCTG TGGGGAATTAGCGGGTGAGCCGATTGGCGCCATGTTACTTGTCGCAATGGGCTATGATCAACTTAGTATGAACCAAGCAA GCTTAGCGCGGATTAATTATCTGTTAAGGCGTGTTTCCCAAACAGAGTTGAATCAGTTACTGGGTGAGGCGTTAAAGCTT AATAGTGGCGAAGAGGTGAGGTTGCTAGTGGCTCAATACTGTGAGCAAAAGGGTCTTGCGTCAGTATTAAGTTAA
Upstream 100 bases:
>100_bases ATGAAAGAGTTCGCTGCGACCACTTTGCCTTTGCAGGTTAAAGAGTCGAATAACAGAAGACGAGGTATGCGCAGAAGCTA AATAAGGGAGGTTTGCGGTA
Downstream 100 bases:
>100_bases AAGGGCTTATGCTCTATGAACTCCATCTTGATTGTTTTAAGCTTGATAAATAATAACTACTAAAGGTAGCGCTTGTGGAA AGCTGGCTATATATATTGTG
Product: phosphoenolpyruvate-protein phosphotransferase PtsP
Products: NA
Alternate protein names: Enzyme I-Ntr; Phosphotransferase system, enzyme I [H]
Number of amino acids: Translated: 744; Mature: 744
Protein sequence:
>744_residues MLKTLRDITQAVASSRDLQYALELLVTQTKQAMATECCSIYILEEQQLVLSATDGLDPAAVNRVKLPVTQGLVGLVAQRE EAINLADAPSHPRFKLLPEVAEEAYSAFLAVPIVYQKSVIGVIVVQQVQARQFSEGEEAFLMTLAAQLAVAIKGLTHRAK SSSSLQQRYYTGTQASKGIAIAKALMLGGQISFDLALQRANSIEEEEKRLQDAMNRCKDLLVGLSQRFDREKDEEAASIF KALLLLLEKASLGGEYIEEVRAGWSSETAVCQVSKRYIEHFGSMSDLYLKERANDIRDLGQRVLRQLIEPDKIFLEPETP VILITREASTTLLAEFPRQKLAGIVTELGGANSHAAILARAMGVPAIIGVEGILSANIEKSQIIINANRGQVIIEPSALV LSEYRSLIAAQEEQQRQYAQELSLKAVTLDNKRIYLYINSGLLSSVDSETGADSDGIGLYRTEILFMLKQCFPGEIEQLE IYRKVLKAAGNKPVVMRTLDVGGDKPLDYFPIIEDNPFLGWRGIRLSLDHPELFLVQLRAMLQAAIDTEQLHILLPMVSN LEEIDLSLIYLEQACQELTSELGKSITMPKVGIMLEVPVLLYQLDEVAKRVDFVSVGSNDLTQYLLAVDRNNPSVSPLFD SYHPGVLRALKFAVERCGEHQLPISVCGELAGEPIGAMLLVAMGYDQLSMNQASLARINYLLRRVSQTELNQLLGEALKL NSGEEVRLLVAQYCEQKGLASVLS
Sequences:
>Translated_744_residues MLKTLRDITQAVASSRDLQYALELLVTQTKQAMATECCSIYILEEQQLVLSATDGLDPAAVNRVKLPVTQGLVGLVAQRE EAINLADAPSHPRFKLLPEVAEEAYSAFLAVPIVYQKSVIGVIVVQQVQARQFSEGEEAFLMTLAAQLAVAIKGLTHRAK SSSSLQQRYYTGTQASKGIAIAKALMLGGQISFDLALQRANSIEEEEKRLQDAMNRCKDLLVGLSQRFDREKDEEAASIF KALLLLLEKASLGGEYIEEVRAGWSSETAVCQVSKRYIEHFGSMSDLYLKERANDIRDLGQRVLRQLIEPDKIFLEPETP VILITREASTTLLAEFPRQKLAGIVTELGGANSHAAILARAMGVPAIIGVEGILSANIEKSQIIINANRGQVIIEPSALV LSEYRSLIAAQEEQQRQYAQELSLKAVTLDNKRIYLYINSGLLSSVDSETGADSDGIGLYRTEILFMLKQCFPGEIEQLE IYRKVLKAAGNKPVVMRTLDVGGDKPLDYFPIIEDNPFLGWRGIRLSLDHPELFLVQLRAMLQAAIDTEQLHILLPMVSN LEEIDLSLIYLEQACQELTSELGKSITMPKVGIMLEVPVLLYQLDEVAKRVDFVSVGSNDLTQYLLAVDRNNPSVSPLFD SYHPGVLRALKFAVERCGEHQLPISVCGELAGEPIGAMLLVAMGYDQLSMNQASLARINYLLRRVSQTELNQLLGEALKL NSGEEVRLLVAQYCEQKGLASVLS >Mature_744_residues MLKTLRDITQAVASSRDLQYALELLVTQTKQAMATECCSIYILEEQQLVLSATDGLDPAAVNRVKLPVTQGLVGLVAQRE EAINLADAPSHPRFKLLPEVAEEAYSAFLAVPIVYQKSVIGVIVVQQVQARQFSEGEEAFLMTLAAQLAVAIKGLTHRAK SSSSLQQRYYTGTQASKGIAIAKALMLGGQISFDLALQRANSIEEEEKRLQDAMNRCKDLLVGLSQRFDREKDEEAASIF KALLLLLEKASLGGEYIEEVRAGWSSETAVCQVSKRYIEHFGSMSDLYLKERANDIRDLGQRVLRQLIEPDKIFLEPETP VILITREASTTLLAEFPRQKLAGIVTELGGANSHAAILARAMGVPAIIGVEGILSANIEKSQIIINANRGQVIIEPSALV LSEYRSLIAAQEEQQRQYAQELSLKAVTLDNKRIYLYINSGLLSSVDSETGADSDGIGLYRTEILFMLKQCFPGEIEQLE IYRKVLKAAGNKPVVMRTLDVGGDKPLDYFPIIEDNPFLGWRGIRLSLDHPELFLVQLRAMLQAAIDTEQLHILLPMVSN LEEIDLSLIYLEQACQELTSELGKSITMPKVGIMLEVPVLLYQLDEVAKRVDFVSVGSNDLTQYLLAVDRNNPSVSPLFD SYHPGVLRALKFAVERCGEHQLPISVCGELAGEPIGAMLLVAMGYDQLSMNQASLARINYLLRRVSQTELNQLLGEALKL NSGEEVRLLVAQYCEQKGLASVLS
Specific function: Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. Enzyme I- Ntr transfers the phosphoryl group from phosphoenolpyruvate (PEP)
COG id: COG3605
COG function: function code T; Signal transduction protein containing GAF and PtsI domains
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GAF domain [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=754, Percent_Identity=41.9098143236074, Blast_Score=557, Evalue=1e-160, Organism=Escherichia coli, GI1788756, Length=575, Percent_Identity=33.7391304347826, Blast_Score=299, Evalue=5e-82, Organism=Escherichia coli, GI48994992, Length=510, Percent_Identity=34.7058823529412, Blast_Score=283, Evalue=2e-77, Organism=Escherichia coli, GI1788726, Length=523, Percent_Identity=33.0783938814532, Blast_Score=259, Evalue=4e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003018 - InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR008731 - InterPro: IPR015813 [H]
Pfam domain/function: PF01590 GAF; PF05524 PEP-utilisers_N; PF00391 PEP-utilizers; PF02896 PEP-utilizers_C [H]
EC number: =2.7.3.9 [H]
Molecular weight: Translated: 82103; Mature: 82103
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTLRDITQAVASSRDLQYALELLVTQTKQAMATECCSIYILEEQQLVLSATDGLDPAA CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCHHH VNRVKLPVTQGLVGLVAQREEAINLADAPSHPRFKLLPEVAEEAYSAFLAVPIVYQKSVI HCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVIVVQQVQARQFSEGEEAFLMTLAAQLAVAIKGLTHRAKSSSSLQQRYYTGTQASKGIA HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH IAKALMLGGQISFDLALQRANSIEEEEKRLQDAMNRCKDLLVGLSQRFDREKDEEAASIF HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH KALLLLLEKASLGGEYIEEVRAGWSSETAVCQVSKRYIEHFGSMSDLYLKERANDIRDLG HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH QRVLRQLIEPDKIFLEPETPVILITREASTTLLAEFPRQKLAGIVTELGGANSHAAILAR HHHHHHHCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AMGVPAIIGVEGILSANIEKSQIIINANRGQVIIEPSALVLSEYRSLIAAQEEQQRQYAQ HHCCCEEECCHHHHHCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH ELSLKAVTLDNKRIYLYINSGLLSSVDSETGADSDGIGLYRTEILFMLKQCFPGEIEQLE HCCEEEEEECCCEEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH IYRKVLKAAGNKPVVMRTLDVGGDKPLDYFPIIEDNPFLGWRGIRLSLDHPELFLVQLRA HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH MLQAAIDTEQLHILLPMVSNLEEIDLSLIYLEQACQELTSELGKSITMPKVGIMLEVPVL HHHHHCCHHHHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHH LYQLDEVAKRVDFVSVGSNDLTQYLLAVDRNNPSVSPLFDSYHPGVLRALKFAVERCGEH HHHHHHHHHHHCEEECCCHHHHHHHHHEECCCCCCCCCHHCCCHHHHHHHHHHHHHCCCC QLPISVCGELAGEPIGAMLLVAMGYDQLSMNQASLARINYLLRRVSQTELNQLLGEALKL CCCHHHHHHHCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NSGEEVRLLVAQYCEQKGLASVLS CCCCHHHHHHHHHHHHCCHHHHCC >Mature Secondary Structure MLKTLRDITQAVASSRDLQYALELLVTQTKQAMATECCSIYILEEQQLVLSATDGLDPAA CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCHHH VNRVKLPVTQGLVGLVAQREEAINLADAPSHPRFKLLPEVAEEAYSAFLAVPIVYQKSVI HCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVIVVQQVQARQFSEGEEAFLMTLAAQLAVAIKGLTHRAKSSSSLQQRYYTGTQASKGIA HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH IAKALMLGGQISFDLALQRANSIEEEEKRLQDAMNRCKDLLVGLSQRFDREKDEEAASIF HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH KALLLLLEKASLGGEYIEEVRAGWSSETAVCQVSKRYIEHFGSMSDLYLKERANDIRDLG HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH QRVLRQLIEPDKIFLEPETPVILITREASTTLLAEFPRQKLAGIVTELGGANSHAAILAR HHHHHHHCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AMGVPAIIGVEGILSANIEKSQIIINANRGQVIIEPSALVLSEYRSLIAAQEEQQRQYAQ HHCCCEEECCHHHHHCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH ELSLKAVTLDNKRIYLYINSGLLSSVDSETGADSDGIGLYRTEILFMLKQCFPGEIEQLE HCCEEEEEECCCEEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH IYRKVLKAAGNKPVVMRTLDVGGDKPLDYFPIIEDNPFLGWRGIRLSLDHPELFLVQLRA HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH MLQAAIDTEQLHILLPMVSNLEEIDLSLIYLEQACQELTSELGKSITMPKVGIMLEVPVL HHHHHCCHHHHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHH LYQLDEVAKRVDFVSVGSNDLTQYLLAVDRNNPSVSPLFDSYHPGVLRALKFAVERCGEH HHHHHHHHHHHCEEECCCHHHHHHHHHEECCCCCCCCCHHCCCHHHHHHHHHHHHHCCCC QLPISVCGELAGEPIGAMLLVAMGYDQLSMNQASLARINYLLRRVSQTELNQLLGEALKL CCCHHHHHHHCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NSGEEVRLLVAQYCEQKGLASVLS CCCCHHHHHHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 7896715; 8973315 [H]