| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fbpB2 [H]
Identifier: 167622838
GI number: 167622838
Start: 1118278
End: 1119909
Strand: Direct
Name: fbpB2 [H]
Synonym: Shal_0898
Alternate gene names: 167622838
Gene position: 1118278-1119909 (Clockwise)
Preceding gene: 167622837
Following gene: 167622839
Centisome position: 21.39
GC content: 46.63
Gene sequence:
>1632_bases ATGGTTTTAGGCTTAGCTAAAGGCTGGTCTGTAGCAGGGTACACCTTGGCACTACTGATTATTATGCCGCTTATCGCGCT TATAAGTCAGTCGCTGATGCCAGATGAAGCCGTATTTCCCCACCTTTTTGATACCGTTTTACCCACCTATATCAGCAACA GCCTATGGCTGATATTTTGGGTGGTGATAGGCTCGCTTATTATTGCTATTCCTGCAGCTTGGCTGGTGGCTAAGTGTCAG TTTCCTGGCCGAAGCGTTTTCCAATGGGCGCTATTGTTACCTCTAGCAATGCCCGCCTACGTAGTGGCCTACGTGTATAC CGACCTATTTGATTATGCAGGTCCTGTGCAGCGTAGCTTACGCAGCTTTTTCGGTTGGCAGACACCTCAAGATTATTACT TCCCTGAAGTCCGTTCATTAGGTGGCGCTTCAATCATGTTGGCCTTGGTGCTGTTCCCCTATATCTACCTATTAGCCCGT ACCGCTTTTATGGAGCAATCTACTAGCCTTAGCCAAGCCACAAGGGTGATGGGTTGTGGTCCCTGGAAGAGTTTCTGGCG ATTAAGCTTACCTATGGCGCGTCCAGCATTAGCCGTTGGCGCGGCGTTAGTGGCCATGGAGACGGCGGCGGACTTTGCCA CAGTCAGTTATTTTGCGGTGCCAACATTGACTACGGCTGTTTACGATACCTGGTTTGAATATGGCAGTTTGACTGCAGCA GCTAAGCTTTCAACCATCATGTTATTAGTGATTTTTGCCATGGTGGGTTTTGAGCGTTTCGCGAGGCGAAAACAAAAACT GTTTCAGAAGCCGTCTGCGCCGGGTGAGCTCGATGTTTATTCCTTATCGGGTATTAAGGCATTGGCTGCGACAGGCTATT GCAGTGCACTGCTCACACTCGCTTTCTTACTGCCCTTCATCATACTCGTGAAATACGCTTATGGGTATTTTGCACAAAGC TGGAATCAAGAGTTCTTTGAATATAGCTTCAATAGTTTATGGATTTCTGTGTTAGTGAGCCTTATCTGTGTTGCCATTGG TATTTTGCTGATGTTTATTCGTCGTATTAGTCCTAGACGAGCAGATGTTCTTCCTTCTCGATTAGCATCTACGGGCTATG CTCTACCCGGTACCGTATTAGCTATTGGTATCTTGGTCCCTTTTACTCACTTAGATTTTGCGATAAATGATCTGGTTGAA TATTTTGGTTTTGAGGGCCCCGGGCTTATTTTAACCGGTAGCAGCTTCATTATCGTGTGTGCTTTTTGTATTCGCTTTGC TGCGATTGCTATCGGCAGCATAGAGAACAGTTATAAACGGATCTCACCGTCATTGGATATGGCGGGGATCACTATGGGCC TTAAGCCTGTTGGGCTGTTACGACGGGTGCATATACCTTTGCTGAGAAAAGGGGTTTTTGCAGGGCTATTGCTGGTATTT ATTGAGTGTATGAAGGAGTTACCAGCAGCGCTGCTGTTAAGGCCAATAGGCTTTGAAAACTTAGCGACGTATGTATTTCA GTTTGTATCCGACGAGCAGTTAGAACACGGAGCGCTGGCCGCGATCGTGATTGTATTGGTCGGTCTAATTCCGCTTATTT ACCTTAACCGTTCCTTGGAGCACGATAATTAA
Upstream 100 bases:
>100_bases GTTAGCTCGGTCAACCACTGTTTCAGTTAACCTATCTTAGATAGGTTTTCTTGTTTTTATCAAAGTACACGGATGTATTA TTTTTTAGGTAGTTAATCTT
Downstream 100 bases:
>100_bases TATGGCCACACTACAAGTACAGCGGGTCGTTAGCGACTACCAAGGGCAAGTCGTTTTAAAGGGCTTAGATTTAACCGTTG AGAAAGGAGAAATCGTGGCA
Product: binding-protein-dependent transport systems inner membrane component
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: Iron(III)-transport system permease protein fbpB 2 [H]
Number of amino acids: Translated: 543; Mature: 543
Protein sequence:
>543_residues MVLGLAKGWSVAGYTLALLIIMPLIALISQSLMPDEAVFPHLFDTVLPTYISNSLWLIFWVVIGSLIIAIPAAWLVAKCQ FPGRSVFQWALLLPLAMPAYVVAYVYTDLFDYAGPVQRSLRSFFGWQTPQDYYFPEVRSLGGASIMLALVLFPYIYLLAR TAFMEQSTSLSQATRVMGCGPWKSFWRLSLPMARPALAVGAALVAMETAADFATVSYFAVPTLTTAVYDTWFEYGSLTAA AKLSTIMLLVIFAMVGFERFARRKQKLFQKPSAPGELDVYSLSGIKALAATGYCSALLTLAFLLPFIILVKYAYGYFAQS WNQEFFEYSFNSLWISVLVSLICVAIGILLMFIRRISPRRADVLPSRLASTGYALPGTVLAIGILVPFTHLDFAINDLVE YFGFEGPGLILTGSSFIIVCAFCIRFAAIAIGSIENSYKRISPSLDMAGITMGLKPVGLLRRVHIPLLRKGVFAGLLLVF IECMKELPAALLLRPIGFENLATYVFQFVSDEQLEHGALAAIVIVLVGLIPLIYLNRSLEHDN
Sequences:
>Translated_543_residues MVLGLAKGWSVAGYTLALLIIMPLIALISQSLMPDEAVFPHLFDTVLPTYISNSLWLIFWVVIGSLIIAIPAAWLVAKCQ FPGRSVFQWALLLPLAMPAYVVAYVYTDLFDYAGPVQRSLRSFFGWQTPQDYYFPEVRSLGGASIMLALVLFPYIYLLAR TAFMEQSTSLSQATRVMGCGPWKSFWRLSLPMARPALAVGAALVAMETAADFATVSYFAVPTLTTAVYDTWFEYGSLTAA AKLSTIMLLVIFAMVGFERFARRKQKLFQKPSAPGELDVYSLSGIKALAATGYCSALLTLAFLLPFIILVKYAYGYFAQS WNQEFFEYSFNSLWISVLVSLICVAIGILLMFIRRISPRRADVLPSRLASTGYALPGTVLAIGILVPFTHLDFAINDLVE YFGFEGPGLILTGSSFIIVCAFCIRFAAIAIGSIENSYKRISPSLDMAGITMGLKPVGLLRRVHIPLLRKGVFAGLLLVF IECMKELPAALLLRPIGFENLATYVFQFVSDEQLEHGALAAIVIVLVGLIPLIYLNRSLEHDN >Mature_543_residues MVLGLAKGWSVAGYTLALLIIMPLIALISQSLMPDEAVFPHLFDTVLPTYISNSLWLIFWVVIGSLIIAIPAAWLVAKCQ FPGRSVFQWALLLPLAMPAYVVAYVYTDLFDYAGPVQRSLRSFFGWQTPQDYYFPEVRSLGGASIMLALVLFPYIYLLAR TAFMEQSTSLSQATRVMGCGPWKSFWRLSLPMARPALAVGAALVAMETAADFATVSYFAVPTLTTAVYDTWFEYGSLTAA AKLSTIMLLVIFAMVGFERFARRKQKLFQKPSAPGELDVYSLSGIKALAATGYCSALLTLAFLLPFIILVKYAYGYFAQS WNQEFFEYSFNSLWISVLVSLICVAIGILLMFIRRISPRRADVLPSRLASTGYALPGTVLAIGILVPFTHLDFAINDLVE YFGFEGPGLILTGSSFIIVCAFCIRFAAIAIGSIENSYKRISPSLDMAGITMGLKPVGLLRRVHIPLLRKGVFAGLLLVF IECMKELPAALLLRPIGFENLATYVFQFVSDEQLEHGALAAIVIVLVGLIPLIYLNRSLEHDN
Specific function: Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in Fe(3+) ions import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1178
COG function: function code P; ABC-type Fe3+ transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transmembrane type-1 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 59904; Mature: 59904
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLGLAKGWSVAGYTLALLIIMPLIALISQSLMPDEAVFPHLFDTVLPTYISNSLWLIFW CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHH VVIGSLIIAIPAAWLVAKCQFPGRSVFQWALLLPLAMPAYVVAYVYTDLFDYAGPVQRSL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH RSFFGWQTPQDYYFPEVRSLGGASIMLALVLFPYIYLLARTAFMEQSTSLSQATRVMGCG HHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PWKSFWRLSLPMARPALAVGAALVAMETAADFATVSYFAVPTLTTAVYDTWFEYGSLTAA CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AKLSTIMLLVIFAMVGFERFARRKQKLFQKPSAPGELDVYSLSGIKALAATGYCSALLTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH AFLLPFIILVKYAYGYFAQSWNQEFFEYSFNSLWISVLVSLICVAIGILLMFIRRISPRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH ADVLPSRLASTGYALPGTVLAIGILVPFTHLDFAINDLVEYFGFEGPGLILTGSSFIIVC HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH AFCIRFAAIAIGSIENSYKRISPSLDMAGITMGLKPVGLLRRVHIPLLRKGVFAGLLLVF HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IECMKELPAALLLRPIGFENLATYVFQFVSDEQLEHGALAAIVIVLVGLIPLIYLNRSLE HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HDN CCC >Mature Secondary Structure MVLGLAKGWSVAGYTLALLIIMPLIALISQSLMPDEAVFPHLFDTVLPTYISNSLWLIFW CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHH VVIGSLIIAIPAAWLVAKCQFPGRSVFQWALLLPLAMPAYVVAYVYTDLFDYAGPVQRSL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH RSFFGWQTPQDYYFPEVRSLGGASIMLALVLFPYIYLLARTAFMEQSTSLSQATRVMGCG HHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PWKSFWRLSLPMARPALAVGAALVAMETAADFATVSYFAVPTLTTAVYDTWFEYGSLTAA CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AKLSTIMLLVIFAMVGFERFARRKQKLFQKPSAPGELDVYSLSGIKALAATGYCSALLTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH AFLLPFIILVKYAYGYFAQSWNQEFFEYSFNSLWISVLVSLICVAIGILLMFIRRISPRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH ADVLPSRLASTGYALPGTVLAIGILVPFTHLDFAINDLVEYFGFEGPGLILTGSSFIIVC HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH AFCIRFAAIAIGSIENSYKRISPSLDMAGITMGLKPVGLLRRVHIPLLRKGVFAGLLLVF HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IECMKELPAALLLRPIGFENLATYVFQFVSDEQLEHGALAAIVIVLVGLIPLIYLNRSLE HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HDN CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800; 7927717 [H]