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The map label for this gene is ycaC [C]

Identifier: 167622827

GI number: 167622827

Start: 1106877

End: 1107419

Strand: Reverse

Name: ycaC [C]

Synonym: Shal_0887

Alternate gene names: 167622827

Gene position: 1107419-1106877 (Counterclockwise)

Preceding gene: 167622833

Following gene: 167622825

Centisome position: 21.19

GC content: 42.91

Gene sequence:

>543_bases
ATGCTAAAAGCAGAAGAATGTGTATTGGTTATAGTGGATGTTCAGGGTCAGCTAGCGCGAGTTATGCATCATAGTGAGCA
GCTACATCACAAACTAGAAGTGCTCATTAAAGGAATACAACTATTTGATATTCCGATTTTGTGGCTCGAACAGATCCCCG
AGAAACTGGGCCCCACCAGTGAAAACTTAGCCATGGAGCTAACAAAAACGACTGAAGCTATCACCAAGCACCACTTTAGT
GGTTGGCAAGCAGACGCATTCAGAGAAAGGCTCAGCGCGATGCAGCAAAAGCAGATTATCTTAGCGGGTATTGAAACTCA
TGTGTGTGTTTATCAGACTTGTAGAGATCTATTGGCTAACGGCTACCAAACTCATCTGGTAGCTGATGCTATGTCGTCAA
GAGAACAGAGCAATAAAGTCAGCGGATTAGAGATGATGCTAAGCCATGGCGCAATGCAAACCAATGTTGAATCTCTACTG
TTTGAGTTACAACATCAAGCTAAAGGCGATCGCTTTAAAGCCTTGCTTAACCTAATAAAGTAA

Upstream 100 bases:

>100_bases
AGCACTCATATTGGAATTAGACCCATTTCTAATTGGAGAAGCCAAACAGATCTGATTTACTAGCAGGTTCACTCCCCTTG
CAAATATAGAAAGGCCTAAG

Downstream 100 bases:

>100_bases
AAGCAAAAAAAAGCCCTCCTAGGAGGGCTTCAATTCTAAACACTATCTTCTAACGAGAGTAATTCTAAACACTATGCAGT
GTGAATAGACTTACTTGTAA

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Superfamily Hydrolase; Isochorismatase Hydrolase Family Protein; Nicotinamidase-Like Amidase; Amidase; Isochorismatase Domain-Containing; Hydrolase; Isochorismatase Family Hydrolase; Isochorismatase Hydrolase Family; YcaC-Related Amidohydrolase; Isochorismatase Family; Hydrolase Isochorismatase Family; Amidase Related Nicotinamidase; Nicotinamidase-Related Amidase; Amidohydrolase; Hydrolase Isochorismatase; YcaC Like Amidohydrolase; Nicotinamidase; Isochorismatase Domain-Containing A

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLKAEECVLVIVDVQGQLARVMHHSEQLHHKLEVLIKGIQLFDIPILWLEQIPEKLGPTSENLAMELTKTTEAITKHHFS
GWQADAFRERLSAMQQKQIILAGIETHVCVYQTCRDLLANGYQTHLVADAMSSREQSNKVSGLEMMLSHGAMQTNVESLL
FELQHQAKGDRFKALLNLIK

Sequences:

>Translated_180_residues
MLKAEECVLVIVDVQGQLARVMHHSEQLHHKLEVLIKGIQLFDIPILWLEQIPEKLGPTSENLAMELTKTTEAITKHHFS
GWQADAFRERLSAMQQKQIILAGIETHVCVYQTCRDLLANGYQTHLVADAMSSREQSNKVSGLEMMLSHGAMQTNVESLL
FELQHQAKGDRFKALLNLIK
>Mature_180_residues
MLKAEECVLVIVDVQGQLARVMHHSEQLHHKLEVLIKGIQLFDIPILWLEQIPEKLGPTSENLAMELTKTTEAITKHHFS
GWQADAFRERLSAMQQKQIILAGIETHVCVYQTCRDLLANGYQTHLVADAMSSREQSNKVSGLEMMLSHGAMQTNVESLL
FELQHQAKGDRFKALLNLIK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI209969695, Length=174, Percent_Identity=31.6091954022989, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI103471987, Length=179, Percent_Identity=27.9329608938547, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI13376007, Length=190, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17540156, Length=171, Percent_Identity=31.5789473684211, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19922924, Length=178, Percent_Identity=24.7191011235955, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21357489, Length=176, Percent_Identity=28.9772727272727, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20395; Mature: 20395

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAEECVLVIVDVQGQLARVMHHSEQLHHKLEVLIKGIQLFDIPILWLEQIPEKLGPTS
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ENLAMELTKTTEAITKHHFSGWQADAFRERLSAMQQKQIILAGIETHVCVYQTCRDLLAN
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYQTHLVADAMSSREQSNKVSGLEMMLSHGAMQTNVESLLFELQHQAKGDRFKALLNLIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
>Mature Secondary Structure
MLKAEECVLVIVDVQGQLARVMHHSEQLHHKLEVLIKGIQLFDIPILWLEQIPEKLGPTS
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ENLAMELTKTTEAITKHHFSGWQADAFRERLSAMQQKQIILAGIETHVCVYQTCRDLLAN
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYQTHLVADAMSSREQSNKVSGLEMMLSHGAMQTNVESLLFELQHQAKGDRFKALLNLIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA