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The map label for this gene is nrfA [H]

Identifier: 167622826

GI number: 167622826

Start: 1105383

End: 1106786

Strand: Direct

Name: nrfA [H]

Synonym: Shal_0886

Alternate gene names: 167622826

Gene position: 1105383-1106786 (Clockwise)

Preceding gene: 167622823

Following gene: 167622828

Centisome position: 21.15

GC content: 44.87

Gene sequence:

>1404_bases
ATGGTGAAAACATTAACTAAAAAGTCTTTTGCACTGAGTGCAATCGTCGCTGCAAGTTTAATGGCTGGTAGCGCAATCGC
AAGCGATAAAACAGAACCACGTAACGAAGTTTACAAAGATAAGTTTTCAAAGCAGTATAACAGCTGGCACGAGACTTCTG
ACAGTGTTGAAATCACCGATGCACTTGAGCAAGATCCAAATCTAGTTATTCTTTGGGCGGGTTACGGCTTTGCTAAGGAT
TATAACAAGGCTCGTGGTCATATGTATGCCGTTACTGACGTACGTAACACGCTACGTACTGGTGCACCTAAGTCTGATAC
TGACGGTCCAATGCCAATGGCATGTTGGTCTTGTAAGAGCCCAGACGTACCTCGCATGATTGAAGAGCAAGGTGAAGACG
GTTACTTCAAAGGTAAGTGGGCAAAAGGTGGTGATGAGATCGTAAACACTATCGGTTGTTCTGACTGTCACGAAAAAGGT
AAGTCTAAACTACGTATCTCTCGTCCATTCGCTGAGCGCGCAATGGAAAGCATTGGCACTCCATTCGACGAAGCTTCTCG
TAAAGACAAGCAATCAATGGTTTGTGGTCAGTGCCACGTAGAGTACTACTTCGAAAAGACTGCTGATCAGAAAGGCTTTG
TTAAGTTCCCATGGGACAAGGGTACGACTGTTGAAGATATGGAAGCATATTATGACGGTATCGACTTTGCAGATTGGACT
CACGCCGTTTCTAAGACGCCAATGCTAAAAGCACAGCACCCAGGTTATGAAACTTGGCAGCTAGGTATGCACGGTAAGAA
CAACGTAAGTTGTACTGACTGTCACATGCCTAAAGTTAAGAATGCTGAAGGCCGCAAGTTTACCGATCACAAAGTGGGTA
ACCCATTTGATCGTTTCGAAGAAACTTGTGGTACTTGTCATGAGCAAAGCAAAGAGTTCATGGTTAACCTAGATAACGAG
CGTAAAGCTAAGGTTAAGCAGATCCAACTTCAAGCTGAAGACCAGTTAGTTAAAGCTCACTTCGAAGCAGGCGCTGCTTG
GGAAGCTGGCGCAACTGAAGCTGAAATGGCACCAATCCTAATGGATATCCGTCATGGTCAATGGCGTTGGGACTATGCAA
TCGCTTCTCACGGTGTTGCATCTCACGCTCCAGATGAAGCATTACGTGTATTGGGTACTGCACTGAATAAAGCGGCTGAT
GCTCGCGTTAAGCTAGCTCAACTACTTGCTAAGAAAGGTGTTAAGCAGCCTATCGCTCTTCCAGATATCTCTACTAAAGC
TAAGGCTCAAGCTGCTCTAGGTATGGATATGAAGAAGATGAACGCTGATAAAGCTGAATTCAAGAAGACTGTTCTACCTA
AGTGGGATGCTGAAGCTGAAAAGCGCGAAGCAACTTACAAGTAA

Upstream 100 bases:

>100_bases
GATACCTCGTTGGAGGTATGTCTTTGTTGCGTAGAAGTGATAAATTCAGCCTTGAAATAGGTGGGACTATACAAAAATAT
AAAAGTAACATGGAGATGAG

Downstream 100 bases:

>100_bases
GTCTATTCACACTGCATAGTGTTTAGAATTACTCTCGTTAGAAGATAGTGTTTAGAATTGAAGCCCTCCTAGGAGGGCTT
TTTTTTGCTTTTACTTTATT

Product: cytochrome c552

Products: NA

Alternate protein names: Ammonia-forming cytochrome c nitrite reductase; Cytochrome c nitrite reductase [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MVKTLTKKSFALSAIVAASLMAGSAIASDKTEPRNEVYKDKFSKQYNSWHETSDSVEITDALEQDPNLVILWAGYGFAKD
YNKARGHMYAVTDVRNTLRTGAPKSDTDGPMPMACWSCKSPDVPRMIEEQGEDGYFKGKWAKGGDEIVNTIGCSDCHEKG
KSKLRISRPFAERAMESIGTPFDEASRKDKQSMVCGQCHVEYYFEKTADQKGFVKFPWDKGTTVEDMEAYYDGIDFADWT
HAVSKTPMLKAQHPGYETWQLGMHGKNNVSCTDCHMPKVKNAEGRKFTDHKVGNPFDRFEETCGTCHEQSKEFMVNLDNE
RKAKVKQIQLQAEDQLVKAHFEAGAAWEAGATEAEMAPILMDIRHGQWRWDYAIASHGVASHAPDEALRVLGTALNKAAD
ARVKLAQLLAKKGVKQPIALPDISTKAKAQAALGMDMKKMNADKAEFKKTVLPKWDAEAEKREATYK

Sequences:

>Translated_467_residues
MVKTLTKKSFALSAIVAASLMAGSAIASDKTEPRNEVYKDKFSKQYNSWHETSDSVEITDALEQDPNLVILWAGYGFAKD
YNKARGHMYAVTDVRNTLRTGAPKSDTDGPMPMACWSCKSPDVPRMIEEQGEDGYFKGKWAKGGDEIVNTIGCSDCHEKG
KSKLRISRPFAERAMESIGTPFDEASRKDKQSMVCGQCHVEYYFEKTADQKGFVKFPWDKGTTVEDMEAYYDGIDFADWT
HAVSKTPMLKAQHPGYETWQLGMHGKNNVSCTDCHMPKVKNAEGRKFTDHKVGNPFDRFEETCGTCHEQSKEFMVNLDNE
RKAKVKQIQLQAEDQLVKAHFEAGAAWEAGATEAEMAPILMDIRHGQWRWDYAIASHGVASHAPDEALRVLGTALNKAAD
ARVKLAQLLAKKGVKQPIALPDISTKAKAQAALGMDMKKMNADKAEFKKTVLPKWDAEAEKREATYK
>Mature_467_residues
MVKTLTKKSFALSAIVAASLMAGSAIASDKTEPRNEVYKDKFSKQYNSWHETSDSVEITDALEQDPNLVILWAGYGFAKD
YNKARGHMYAVTDVRNTLRTGAPKSDTDGPMPMACWSCKSPDVPRMIEEQGEDGYFKGKWAKGGDEIVNTIGCSDCHEKG
KSKLRISRPFAERAMESIGTPFDEASRKDKQSMVCGQCHVEYYFEKTADQKGFVKFPWDKGTTVEDMEAYYDGIDFADWT
HAVSKTPMLKAQHPGYETWQLGMHGKNNVSCTDCHMPKVKNAEGRKFTDHKVGNPFDRFEETCGTCHEQSKEFMVNLDNE
RKAKVKQIQLQAEDQLVKAHFEAGAAWEAGATEAEMAPILMDIRHGQWRWDYAIASHGVASHAPDEALRVLGTALNKAAD
ARVKLAQLLAKKGVKQPIALPDISTKAKAQAALGMDMKKMNADKAEFKKTVLPKWDAEAEKREATYK

Specific function: Plays a role in nitrite reduction [H]

COG id: COG3303

COG function: function code P; Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c-552 family [H]

Homologues:

Organism=Escherichia coli, GI1790506, Length=438, Percent_Identity=62.1004566210046, Blast_Score=592, Evalue=1e-170,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003321
- InterPro:   IPR017570
- InterPro:   IPR011031 [H]

Pfam domain/function: PF02335 Cytochrom_C552 [H]

EC number: =1.7.2.2 [H]

Molecular weight: Translated: 52131; Mature: 52131

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKTLTKKSFALSAIVAASLMAGSAIASDKTEPRNEVYKDKFSKQYNSWHETSDSVEITD
CCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHH
ALEQDPNLVILWAGYGFAKDYNKARGHMYAVTDVRNTLRTGAPKSDTDGPMPMACWSCKS
HHCCCCCEEEEECCCCCHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCC
PDVPRMIEEQGEDGYFKGKWAKGGDEIVNTIGCSDCHEKGKSKLRISRPFAERAMESIGT
CCCCHHHHHCCCCCEEECCCCCCHHHHHHHCCCHHHHHCCCCCEEEECHHHHHHHHHHCC
PFDEASRKDKQSMVCGQCHVEYYFEKTADQKGFVKFPWDKGTTVEDMEAYYDGIDFADWT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHH
HAVSKTPMLKAQHPGYETWQLGMHGKNNVSCTDCHMPKVKNAEGRKFTDHKVGNPFDRFE
HHHHCCCCCEECCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
ETCGTCHEQSKEFMVNLDNERKAKVKQIQLQAEDQLVKAHFEAGAAWEAGATEAEMAPIL
HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
MDIRHGQWRWDYAIASHGVASHAPDEALRVLGTALNKAADARVKLAQLLAKKGVKQPIAL
HHHCCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDISTKAKAQAALGMDMKKMNADKAEFKKTVLPKWDAEAEKREATYK
CCCCHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MVKTLTKKSFALSAIVAASLMAGSAIASDKTEPRNEVYKDKFSKQYNSWHETSDSVEITD
CCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHH
ALEQDPNLVILWAGYGFAKDYNKARGHMYAVTDVRNTLRTGAPKSDTDGPMPMACWSCKS
HHCCCCCEEEEECCCCCHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCC
PDVPRMIEEQGEDGYFKGKWAKGGDEIVNTIGCSDCHEKGKSKLRISRPFAERAMESIGT
CCCCHHHHHCCCCCEEECCCCCCHHHHHHHCCCHHHHHCCCCCEEEECHHHHHHHHHHCC
PFDEASRKDKQSMVCGQCHVEYYFEKTADQKGFVKFPWDKGTTVEDMEAYYDGIDFADWT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHH
HAVSKTPMLKAQHPGYETWQLGMHGKNNVSCTDCHMPKVKNAEGRKFTDHKVGNPFDRFE
HHHHCCCCCEECCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
ETCGTCHEQSKEFMVNLDNERKAKVKQIQLQAEDQLVKAHFEAGAAWEAGATEAEMAPIL
HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
MDIRHGQWRWDYAIASHGVASHAPDEALRVLGTALNKAADARVKLAQLLAKKGVKQPIAL
HHHCCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDISTKAKAQAALGMDMKKMNADKAEFKKTVLPKWDAEAEKREATYK
CCCCHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA