| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622791
Identifier: 167622791
GI number: 167622791
Start: 1057988
End: 1059427
Strand: Direct
Name: 167622791
Synonym: Shal_0851
Alternate gene names: NA
Gene position: 1057988-1059427 (Clockwise)
Preceding gene: 167622790
Following gene: 167622796
Centisome position: 20.24
GC content: 44.44
Gene sequence:
>1440_bases GTGTATGTGTCTAAAGTCAGAGTCAAACAGGAAGAATCACTTTCAATTAAGTTTCTCCATCAGATGGAGGTGGGCGATAG CCGTCGACTGGATCTGTATTTTTTTCTTCCTAAAGAGATGGGCATTAACCCACAAAGTCTGAACGAAGAAGAGTATTATC ACTCTTCAATTACAGGACGCCGCTCATACTACTCATCGGGGCTGCACCTGCCTTTAGTACAAAGTCGCTTTGTGAGTCAA AAAAAGCGCACCGTAGAGGAGTTTAGGCTCTACTTGAACTTGTTTGCCTACCAGTTTTCCGTGGCGATTGAGACCGATAG CAAAGAGCTCGCTCAGATTGAAGATTTTGAGCGGTTTTACTCATCGCTCGATGAGTTGAGCGAACAAGTTATTCATCTAC TCAAGCGTTTTAGGCGTAATGAGCCCAGTGATGAAAAGTGGAAATCATACTTCGAAAATGCCGATAATTATCTTTCTTGG TTATGTGAGCAGCGCTTGCTTAAGCTGCTAGCTCATGCGCCTAGAACCAGTGACTTTAATGAAATTAACGATAGAGTCGT GGCGCTTTGTCGGGCTGAGGCGCTTTATCGTCAAGAGCGAAGTTATAACTCATCTCAAACCATTAAAGATCCCAACCGTA TTGCCAATAAGATGCTGTTATTAAGGCGTCTTATTCAGCAGGGGGTGGTACTTAAAGAGGATTTGAAGACCTTAGGCGTA GGGCTTAAGAAGATGACTACGGGCATTGCAACCGCAATGGTGATGTTGGTTGTCTCAGCACTGATTATTAAGGCGCAGGG TTTTTTTAGTGGCTTAACGATTGCGCTGGTGCTGACGCTTGCGGTGATTTACGGTTTTCGTGAAATCTTTAAAGATGATA TTCGTAATGCCCTATGGCGGCAGATCCAAAAAGGGCGGCCGCGTTGGAGCCGAACGTTAAGCGATACAACCAGTAAAAAT ACCGTCGCTCGACAGTTAGTTTGGCTAGAGTTTATGCGCAAAAAAGACCTTCCAGATGCCGTATCTCAGATCCTAACTAA GCGACACAGCCAGAATAAAATTGATGCCGAGATCTTTCATTATGGGATCCATACTAAGGTTTCGCAGAAGGATTTCTTAG CGGGATACTCAACAATTCAAGAGCAGGTTAACTTTAGCTTTGTTCCTTTTGCACGTAACTTAGAACGTGGTAAGGCTAAG ATTTATAAAGAGCAAGACGGCAAGATCAGTAATGAGTCCGTTGAACGTCGATATCAAGTGAACCTGATTTTGGCATTGCG CGAAGGTAAGCAAGCACCACAGTATGCGCGCTATAAGATCACCATGAATCGTTCGGCAATTATTGAGATCACCGAAAGCG ATTTACCGTCAGGAGTGGCAACCATGGAAGAGGCCCCTTTTAAGGAGGAGCTTAAGGGTAAAAGCCCTCTGGTAGAGTGA
Upstream 100 bases:
>100_bases AGCTTATAGCTTATCCGCAAGTCCTAAAATATAGGTTAGACTAGAAAGAGTTAGTTAACCTTATCCACATCGTTGTGGTT CTCTAAATACTTTTAAAAAG
Downstream 100 bases:
>100_bases GGGCTGATAAACAGTCTGGACAACTAGCCGTTTTAAACGAGCAGTCTGGTATATGCTTGGCAGATATTCTGGTCACCAGT CTGTTTAGCGCGTTTAAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MYVSKVRVKQEESLSIKFLHQMEVGDSRRLDLYFFLPKEMGINPQSLNEEEYYHSSITGRRSYYSSGLHLPLVQSRFVSQ KKRTVEEFRLYLNLFAYQFSVAIETDSKELAQIEDFERFYSSLDELSEQVIHLLKRFRRNEPSDEKWKSYFENADNYLSW LCEQRLLKLLAHAPRTSDFNEINDRVVALCRAEALYRQERSYNSSQTIKDPNRIANKMLLLRRLIQQGVVLKEDLKTLGV GLKKMTTGIATAMVMLVVSALIIKAQGFFSGLTIALVLTLAVIYGFREIFKDDIRNALWRQIQKGRPRWSRTLSDTTSKN TVARQLVWLEFMRKKDLPDAVSQILTKRHSQNKIDAEIFHYGIHTKVSQKDFLAGYSTIQEQVNFSFVPFARNLERGKAK IYKEQDGKISNESVERRYQVNLILALREGKQAPQYARYKITMNRSAIIEITESDLPSGVATMEEAPFKEELKGKSPLVE
Sequences:
>Translated_479_residues MYVSKVRVKQEESLSIKFLHQMEVGDSRRLDLYFFLPKEMGINPQSLNEEEYYHSSITGRRSYYSSGLHLPLVQSRFVSQ KKRTVEEFRLYLNLFAYQFSVAIETDSKELAQIEDFERFYSSLDELSEQVIHLLKRFRRNEPSDEKWKSYFENADNYLSW LCEQRLLKLLAHAPRTSDFNEINDRVVALCRAEALYRQERSYNSSQTIKDPNRIANKMLLLRRLIQQGVVLKEDLKTLGV GLKKMTTGIATAMVMLVVSALIIKAQGFFSGLTIALVLTLAVIYGFREIFKDDIRNALWRQIQKGRPRWSRTLSDTTSKN TVARQLVWLEFMRKKDLPDAVSQILTKRHSQNKIDAEIFHYGIHTKVSQKDFLAGYSTIQEQVNFSFVPFARNLERGKAK IYKEQDGKISNESVERRYQVNLILALREGKQAPQYARYKITMNRSAIIEITESDLPSGVATMEEAPFKEELKGKSPLVE >Mature_479_residues MYVSKVRVKQEESLSIKFLHQMEVGDSRRLDLYFFLPKEMGINPQSLNEEEYYHSSITGRRSYYSSGLHLPLVQSRFVSQ KKRTVEEFRLYLNLFAYQFSVAIETDSKELAQIEDFERFYSSLDELSEQVIHLLKRFRRNEPSDEKWKSYFENADNYLSW LCEQRLLKLLAHAPRTSDFNEINDRVVALCRAEALYRQERSYNSSQTIKDPNRIANKMLLLRRLIQQGVVLKEDLKTLGV GLKKMTTGIATAMVMLVVSALIIKAQGFFSGLTIALVLTLAVIYGFREIFKDDIRNALWRQIQKGRPRWSRTLSDTTSKN TVARQLVWLEFMRKKDLPDAVSQILTKRHSQNKIDAEIFHYGIHTKVSQKDFLAGYSTIQEQVNFSFVPFARNLERGKAK IYKEQDGKISNESVERRYQVNLILALREGKQAPQYARYKITMNRSAIIEITESDLPSGVATMEEAPFKEELKGKSPLVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55725; Mature: 55725
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYVSKVRVKQEESLSIKFLHQMEVGDSRRLDLYFFLPKEMGINPQSLNEEEYYHSSITGR CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECHHHCCCCCCCCHHHHHHHHCCCC RSYYSSGLHLPLVQSRFVSQKKRTVEEFRLYLNLFAYQFSVAIETDSKELAQIEDFERFY HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH SSLDELSEQVIHLLKRFRRNEPSDEKWKSYFENADNYLSWLCEQRLLKLLAHAPRTSDFN HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHH EINDRVVALCRAEALYRQERSYNSSQTIKDPNRIANKMLLLRRLIQQGVVLKEDLKTLGV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC GLKKMTTGIATAMVMLVVSALIIKAQGFFSGLTIALVLTLAVIYGFREIFKDDIRNALWR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIQKGRPRWSRTLSDTTSKNTVARQLVWLEFMRKKDLPDAVSQILTKRHSQNKIDAEIFH HHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHH YGIHTKVSQKDFLAGYSTIQEQVNFSFVPFARNLERGKAKIYKEQDGKISNESVERRYQV HCCCCCCCHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEE NLILALREGKQAPQYARYKITMNRSAIIEITESDLPSGVATMEEAPFKEELKGKSPLVE EEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCHHHHCCCCCCCC >Mature Secondary Structure MYVSKVRVKQEESLSIKFLHQMEVGDSRRLDLYFFLPKEMGINPQSLNEEEYYHSSITGR CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECHHHCCCCCCCCHHHHHHHHCCCC RSYYSSGLHLPLVQSRFVSQKKRTVEEFRLYLNLFAYQFSVAIETDSKELAQIEDFERFY HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH SSLDELSEQVIHLLKRFRRNEPSDEKWKSYFENADNYLSWLCEQRLLKLLAHAPRTSDFN HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHH EINDRVVALCRAEALYRQERSYNSSQTIKDPNRIANKMLLLRRLIQQGVVLKEDLKTLGV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC GLKKMTTGIATAMVMLVVSALIIKAQGFFSGLTIALVLTLAVIYGFREIFKDDIRNALWR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIQKGRPRWSRTLSDTTSKNTVARQLVWLEFMRKKDLPDAVSQILTKRHSQNKIDAEIFH HHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHH YGIHTKVSQKDFLAGYSTIQEQVNFSFVPFARNLERGKAKIYKEQDGKISNESVERRYQV HCCCCCCCHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEE NLILALREGKQAPQYARYKITMNRSAIIEITESDLPSGVATMEEAPFKEELKGKSPLVE EEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA