| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622790
Identifier: 167622790
GI number: 167622790
Start: 1057347
End: 1057877
Strand: Direct
Name: 167622790
Synonym: Shal_0850
Alternate gene names: NA
Gene position: 1057347-1057877 (Clockwise)
Preceding gene: 167622789
Following gene: 167622791
Centisome position: 20.23
GC content: 40.49
Gene sequence:
>531_bases ATGAAGGAGAATACTTTTTTAGGCTTTAAGACGACGCCAATGTTAGCAACGCTAACTTTTATATGTGGTTTATGCTTGTT TCTTGAGCATACGGTTGATCCTGATATGAACTCGACGCTAACCTGTTACTCTGATACTTACCGTGTAGGAGAGGGCTTTA AAAACAATCAACAACTGGTGCTGAAAAATACCGGAAATGGTGTTGAGGTGGCTTTGAACTTTTTCAAAGGAGAAAAGTTA ATCCATAAACTTATGGCCGTAGGGACAGTTAAAAAAGTTAAGGACTCGATTCTGAGCTATGAAGTCAGTTTGGCTAGTGA GCAACACCTAAGAGGGGTATTACAAGCTGAGAGTGAGTCGTCGTTGCAAGATGCGATTAGATTTTCTGAACTCGTGTTAG GCGATGGTAAGAGTGATAAGTTCTTAATTAAGGTACTGGAGATGAATAAAGCTAGCAACGTCGTGACAGTGCAAGTGCAG CCTGGTAACGGTCTGTGGGCTTGTAAAATTAATAAAACCAAGTTCAGTTAG
Upstream 100 bases:
>100_bases GGCAAAGCATGTAGAAATTTAAAAGTAACTAATGTGGCTAAAGATTGGCATTTTATTGATTTAGCCTGGCTAAAAGAGGC TGGGATTTGTGAATAAATTT
Downstream 100 bases:
>100_bases GTAGCCATAAAGCTTATAGCTTATCCGCAAGTCCTAAAATATAGGTTAGACTAGAAAGAGTTAGTTAACCTTATCCACAT CGTTGTGGTTCTCTAAATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MKENTFLGFKTTPMLATLTFICGLCLFLEHTVDPDMNSTLTCYSDTYRVGEGFKNNQQLVLKNTGNGVEVALNFFKGEKL IHKLMAVGTVKKVKDSILSYEVSLASEQHLRGVLQAESESSLQDAIRFSELVLGDGKSDKFLIKVLEMNKASNVVTVQVQ PGNGLWACKINKTKFS
Sequences:
>Translated_176_residues MKENTFLGFKTTPMLATLTFICGLCLFLEHTVDPDMNSTLTCYSDTYRVGEGFKNNQQLVLKNTGNGVEVALNFFKGEKL IHKLMAVGTVKKVKDSILSYEVSLASEQHLRGVLQAESESSLQDAIRFSELVLGDGKSDKFLIKVLEMNKASNVVTVQVQ PGNGLWACKINKTKFS >Mature_176_residues MKENTFLGFKTTPMLATLTFICGLCLFLEHTVDPDMNSTLTCYSDTYRVGEGFKNNQQLVLKNTGNGVEVALNFFKGEKL IHKLMAVGTVKKVKDSILSYEVSLASEQHLRGVLQAESESSLQDAIRFSELVLGDGKSDKFLIKVLEMNKASNVVTVQVQ PGNGLWACKINKTKFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19474; Mature: 19474
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKENTFLGFKTTPMLATLTFICGLCLFLEHTVDPDMNSTLTCYSDTYRVGEGFKNNQQLV CCCCEEECEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCCCCCCEEE LKNTGNGVEVALNFFKGEKLIHKLMAVGTVKKVKDSILSYEVSLASEQHLRGVLQAESES EEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH SLQDAIRFSELVLGDGKSDKFLIKVLEMNKASNVVTVQVQPGNGLWACKINKTKFS HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCC >Mature Secondary Structure MKENTFLGFKTTPMLATLTFICGLCLFLEHTVDPDMNSTLTCYSDTYRVGEGFKNNQQLV CCCCEEECEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCCCCCCEEE LKNTGNGVEVALNFFKGEKLIHKLMAVGTVKKVKDSILSYEVSLASEQHLRGVLQAESES EEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH SLQDAIRFSELVLGDGKSDKFLIKVLEMNKASNVVTVQVQPGNGLWACKINKTKFS HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA