Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167622775

Identifier: 167622775

GI number: 167622775

Start: 1037152

End: 1037847

Strand: Direct

Name: 167622775

Synonym: Shal_0835

Alternate gene names: NA

Gene position: 1037152-1037847 (Clockwise)

Preceding gene: 167622773

Following gene: 167622777

Centisome position: 19.84

GC content: 44.4

Gene sequence:

>696_bases
ATGAGTAGTACATCGACACATAAACCTCGGCCTATGGTTGACCTGTTAGTGAGCATCGCCATACCTGCTTTTATTCTAAT
GAAGCTAAGTGGTGAAGATCAGCTCGGGGCGAGTGGTGGATTAATGGTGGCGTTAAGCTTTCCGCTGGGGTGGGGCATAT
TTGAGCTAATAAAGTATAAGAAGTTTAATTTTATTGCCTTGCTTGGATTAGCCAATGTGCTGTTAACCGGTGGCATTGGT
TTACTGGAACTTGACCTTAAGTGGTTGGCAATCAAAGAGGCCGCTATTCCAGCCGCTATCGGCATTGCAGTACTTATTTC
GACCTTTACCTCTAAGCCACTAATTAAAGCCATTGTATTTAATCCAGCGGTAATGGACGTTGACAAGATCATTAAGCGAC
TGCAACAGAACAATTGTGTGGCGGCATTTGAACAGCGATTGATGAAGGCCACCTATTTGGTTGCGGGCTCGTTTGCGTTC
TCAGCCACCATGAATTACATATTGGCTAAATGGATAGTGACTAGCCCAACGGGTACCCCTGAGTTTAATGAACAGTTGGG
AGAGTTGACCCTATACAGTTACCCCATGATAGCCTTGCCTTCTATGGTGATGATGATGGGAATATTTTATTACCTATGGC
GCACTATCCATGATTTAACTGGGCTTAAGCTGGAAGAGGTTTTGGCCAATCAGTAA

Upstream 100 bases:

>100_bases
ACTAAGCTAGCATCAGAGAACTGGCATCATACAAGCAACAGTACTGGTTTTTATCTTAAAATTTTAGCGAAGCTTGCATA
CTTCGCCTGGAAAACAACAC

Downstream 100 bases:

>100_bases
TAATTGTGTCAGGTTGCGCCTGACTTACGCTTTACAGCGATAAGCAATCAAGCTGCGCTTGATAAAGGTCGTGGGATTCC
ATCCCACACCAGGGCAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSSTSTHKPRPMVDLLVSIAIPAFILMKLSGEDQLGASGGLMVALSFPLGWGIFELIKYKKFNFIALLGLANVLLTGGIG
LLELDLKWLAIKEAAIPAAIGIAVLISTFTSKPLIKAIVFNPAVMDVDKIIKRLQQNNCVAAFEQRLMKATYLVAGSFAF
SATMNYILAKWIVTSPTGTPEFNEQLGELTLYSYPMIALPSMVMMMGIFYYLWRTIHDLTGLKLEEVLANQ

Sequences:

>Translated_231_residues
MSSTSTHKPRPMVDLLVSIAIPAFILMKLSGEDQLGASGGLMVALSFPLGWGIFELIKYKKFNFIALLGLANVLLTGGIG
LLELDLKWLAIKEAAIPAAIGIAVLISTFTSKPLIKAIVFNPAVMDVDKIIKRLQQNNCVAAFEQRLMKATYLVAGSFAF
SATMNYILAKWIVTSPTGTPEFNEQLGELTLYSYPMIALPSMVMMMGIFYYLWRTIHDLTGLKLEEVLANQ
>Mature_230_residues
SSTSTHKPRPMVDLLVSIAIPAFILMKLSGEDQLGASGGLMVALSFPLGWGIFELIKYKKFNFIALLGLANVLLTGGIGL
LELDLKWLAIKEAAIPAAIGIAVLISTFTSKPLIKAIVFNPAVMDVDKIIKRLQQNNCVAAFEQRLMKATYLVAGSFAFS
ATMNYILAKWIVTSPTGTPEFNEQLGELTLYSYPMIALPSMVMMMGIFYYLWRTIHDLTGLKLEEVLANQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25368; Mature: 25236

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTSTHKPRPMVDLLVSIAIPAFILMKLSGEDQLGASGGLMVALSFPLGWGIFELIKYK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
KFNFIALLGLANVLLTGGIGLLELDLKWLAIKEAAIPAAIGIAVLISTFTSKPLIKAIVF
HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NPAVMDVDKIIKRLQQNNCVAAFEQRLMKATYLVAGSFAFSATMNYILAKWIVTSPTGTP
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EFNEQLGELTLYSYPMIALPSMVMMMGIFYYLWRTIHDLTGLKLEEVLANQ
HHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure 
SSTSTHKPRPMVDLLVSIAIPAFILMKLSGEDQLGASGGLMVALSFPLGWGIFELIKYK
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
KFNFIALLGLANVLLTGGIGLLELDLKWLAIKEAAIPAAIGIAVLISTFTSKPLIKAIVF
HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NPAVMDVDKIIKRLQQNNCVAAFEQRLMKATYLVAGSFAFSATMNYILAKWIVTSPTGTP
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EFNEQLGELTLYSYPMIALPSMVMMMGIFYYLWRTIHDLTGLKLEEVLANQ
HHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA