| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622736
Identifier: 167622736
GI number: 167622736
Start: 991312
End: 992049
Strand: Direct
Name: 167622736
Synonym: Shal_0796
Alternate gene names: NA
Gene position: 991312-992049 (Clockwise)
Preceding gene: 167622735
Following gene: 167622738
Centisome position: 18.97
GC content: 49.05
Gene sequence:
>738_bases ATGATCATTACTCAAGAAGTCCATGATATTTCGACCGCGACAGGAACCATGCGGACCTACCTATATCGTCCCGATTGCGA AGGGCAATTCGCCACCATTATTTTCTACTCAGAGATTTTTCAGCAAACGGCGCCTATCGCCCGTGCGGCAGCGATCCTCG CCGGTCATGGCTTTGTGGTATTGGTGCCTGAAGTATTCCACGAGCTTAATCCTATTGGCACCGTGCTGGCGTACGACGAT ATCGGTAAAGACAAAGGTAATGCTGACAAGTTTGCTAAGCGCCTTGAACATCATGACAGTGACACCGAAGCACTGGTCGA CTTTGCTCGTAGTTTGATTTTTTGCAGTAGTCATATCGGTAGCATGGGGGTGTGTATTGGCGGGCACTTAGCCTATCGCG CTGCGCTAAATCCCGATATTCAAGGAGCCTTCTGTTTGTACCCAACCGATATTCATTCCAACACTTTGCCTTGTGACAAA GGCAATGACTCCTTGAGCCGAACCGGCGATATAGCAGCCGAGTTAGTGATGATATTTGGTAAACAAGACCCCCATGTTTC AAGCGAGGGGCGCAAGCTGGTGTATGACAAGCTTGAAGCAACTGAGGCTAAGTTTAACTGGTTGGAAGTCAACGCTCAAC ACGCCTTTATGCGTGATGAAGATATTAGGCATGACCCGGCGCTCGCACTGCAGATGTATCTGCAGGCGGTGGCATTTTTT CAACGAACGCTCAAGTAA
Upstream 100 bases:
>100_bases GGATAGATTATAATCGATACAAGAAGATAGCCATTATCTTACCGCTTGTCGCAAATGTGGCGAGTCATAGCTTAGCTAAC AGCGTCTAAGGAAAGAGCCG
Downstream 100 bases:
>100_bases CTACGTTCAAGTAAATACGCTCAAGTAACGCAGCAAGCGTTAATCGTTTTGAATCAACACGGATAAAAAAAGGGCCAGTA TGACTGGCCCTTTTCAGATC
Product: dienelactone hydrolase
Products: NA
Alternate protein names: Carboxymethylenebutenolidase; Dienelactone Hydrolase Family Protein; Dienelactone Hydrolase Family; Hydrolase; Carboxymethylenebutenolidase Family Protein; Threonyl-TRNA Synthetase Class IIA
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MIITQEVHDISTATGTMRTYLYRPDCEGQFATIIFYSEIFQQTAPIARAAAILAGHGFVVLVPEVFHELNPIGTVLAYDD IGKDKGNADKFAKRLEHHDSDTEALVDFARSLIFCSSHIGSMGVCIGGHLAYRAALNPDIQGAFCLYPTDIHSNTLPCDK GNDSLSRTGDIAAELVMIFGKQDPHVSSEGRKLVYDKLEATEAKFNWLEVNAQHAFMRDEDIRHDPALALQMYLQAVAFF QRTLK
Sequences:
>Translated_245_residues MIITQEVHDISTATGTMRTYLYRPDCEGQFATIIFYSEIFQQTAPIARAAAILAGHGFVVLVPEVFHELNPIGTVLAYDD IGKDKGNADKFAKRLEHHDSDTEALVDFARSLIFCSSHIGSMGVCIGGHLAYRAALNPDIQGAFCLYPTDIHSNTLPCDK GNDSLSRTGDIAAELVMIFGKQDPHVSSEGRKLVYDKLEATEAKFNWLEVNAQHAFMRDEDIRHDPALALQMYLQAVAFF QRTLK >Mature_245_residues MIITQEVHDISTATGTMRTYLYRPDCEGQFATIIFYSEIFQQTAPIARAAAILAGHGFVVLVPEVFHELNPIGTVLAYDD IGKDKGNADKFAKRLEHHDSDTEALVDFARSLIFCSSHIGSMGVCIGGHLAYRAALNPDIQGAFCLYPTDIHSNTLPCDK GNDSLSRTGDIAAELVMIFGKQDPHVSSEGRKLVYDKLEATEAKFNWLEVNAQHAFMRDEDIRHDPALALQMYLQAVAFF QRTLK
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320117, Length=231, Percent_Identity=41.5584415584416, Blast_Score=166, Evalue=2e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27195; Mature: 27195
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS00962 RIBOSOMAL_S2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIITQEVHDISTATGTMRTYLYRPDCEGQFATIIFYSEIFQQTAPIARAAAILAGHGFVV CCCCCCHHHHHHHCCHHEEEEECCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCCEEE LVPEVFHELNPIGTVLAYDDIGKDKGNADKFAKRLEHHDSDTEALVDFARSLIFCSSHIG ECHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC SMGVCIGGHLAYRAALNPDIQGAFCLYPTDIHSNTLPCDKGNDSLSRTGDIAAELVMIFG CCEEEECCHHHEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC KQDPHVSSEGRKLVYDKLEATEAKFNWLEVNAQHAFMRDEDIRHDPALALQMYLQAVAFF CCCCCCCCCCCEEHHHHHHHHHHHCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHH QRTLK HHHCC >Mature Secondary Structure MIITQEVHDISTATGTMRTYLYRPDCEGQFATIIFYSEIFQQTAPIARAAAILAGHGFVV CCCCCCHHHHHHHCCHHEEEEECCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCCEEE LVPEVFHELNPIGTVLAYDDIGKDKGNADKFAKRLEHHDSDTEALVDFARSLIFCSSHIG ECHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC SMGVCIGGHLAYRAALNPDIQGAFCLYPTDIHSNTLPCDKGNDSLSRTGDIAAELVMIFG CCEEEECCHHHEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC KQDPHVSSEGRKLVYDKLEATEAKFNWLEVNAQHAFMRDEDIRHDPALALQMYLQAVAFF CCCCCCCCCCCEEHHHHHHHHHHHCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHH QRTLK HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA