Click here to switch to the map view.

The map label for this gene is ygfM [H]

Identifier: 167622596

GI number: 167622596

Start: 801587

End: 802381

Strand: Direct

Name: ygfM [H]

Synonym: Shal_0656

Alternate gene names: 167622596

Gene position: 801587-802381 (Clockwise)

Preceding gene: 167622595

Following gene: 167622597

Centisome position: 15.34

GC content: 44.28

Gene sequence:

>795_bases
ATGATTGAGCAATTTTTACAGCCTGATAATACAGAACAGGCATTGGATTTGATGCAGCAACATAGCGCCTGCGCAACTTG
GTTTGCTGGAGGATCAAAACTCAATGCTAAACCAACATTAACAGAGAAAACGATAGCGATCTCCTTAGATCATCTCTCAC
TCGATAAGATAGAGTTACAAGGCCAAGCCTTACATATTGGCGCGATGTGCCGAGTTCAATCGCTGATTGATAGCGAATTA
ACTCCCTATGCGCTTAAGCAAGCGGCAACCTTTATCTACTCCAAACATCTACGTAATCAAGCAACACTCGGTGGCGAGAT
TGCCGCTTACCAAGATGAATCCCTATTATTACCCACATTGATGGCATTAAAGGCTCACGTTATTACCGCCGATGCCAGCA
ATATTTCAATCGAAGAATATCTGCAACAAGATAACCGTGACTTGATTTTGCAAGTCGTTATTCCTGATATAAATCTTGTT
TGTTTGGCTTTCAATATGACGCGTTCTGCAGCTGGTCTTTCGATCGTTAATGCCGCAGTGTCTCTATCGCAAACAGGTGA
AACCATTATCGTGATAGATGGCGTCTCTCCCCGTAGAGCCGGTTACAGCACCCCCGTCAGACTGACTGATATCGAAGCCC
AAGATTTAGATGAAGAGGCGCTAGAAAAAGCAGTGGCTCAGGCAGTATTTCCAGAAGCCGATATTCGCGGCAGCATTGAA
TATAAGCAGTATATTGCGGGCATCTTAGTGACAGACCTGTTTATCGAGTGCCAACGCTTAGTAAAGGAGGCTTAA

Upstream 100 bases:

>100_bases
GATGTTGGCTTAATAGTTGCTCTTATATATTTATTTGTAGCACCTCTTTAGCTGCATTTATTGATGGTTTCAAAATAGAA
ACCCTTGGGAAGGAAGTATT

Downstream 100 bases:

>100_bases
TCATGAGTATTAACCTAACAATAAACGGCCGTAAAACGGTGTTGACCTGTCGCGTTGGTGAAAATGTTCAGACTTTGCTG
CACAAACTAGGCTACCACTC

Product: putative selenate reductase subunit YgfM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MIEQFLQPDNTEQALDLMQQHSACATWFAGGSKLNAKPTLTEKTIAISLDHLSLDKIELQGQALHIGAMCRVQSLIDSEL
TPYALKQAATFIYSKHLRNQATLGGEIAAYQDESLLLPTLMALKAHVITADASNISIEEYLQQDNRDLILQVVIPDINLV
CLAFNMTRSAAGLSIVNAAVSLSQTGETIIVIDGVSPRRAGYSTPVRLTDIEAQDLDEEALEKAVAQAVFPEADIRGSIE
YKQYIAGILVTDLFIECQRLVKEA

Sequences:

>Translated_264_residues
MIEQFLQPDNTEQALDLMQQHSACATWFAGGSKLNAKPTLTEKTIAISLDHLSLDKIELQGQALHIGAMCRVQSLIDSEL
TPYALKQAATFIYSKHLRNQATLGGEIAAYQDESLLLPTLMALKAHVITADASNISIEEYLQQDNRDLILQVVIPDINLV
CLAFNMTRSAAGLSIVNAAVSLSQTGETIIVIDGVSPRRAGYSTPVRLTDIEAQDLDEEALEKAVAQAVFPEADIRGSIE
YKQYIAGILVTDLFIECQRLVKEA
>Mature_264_residues
MIEQFLQPDNTEQALDLMQQHSACATWFAGGSKLNAKPTLTEKTIAISLDHLSLDKIELQGQALHIGAMCRVQSLIDSEL
TPYALKQAATFIYSKHLRNQATLGGEIAAYQDESLLLPTLMALKAHVITADASNISIEEYLQQDNRDLILQVVIPDINLV
CLAFNMTRSAAGLSIVNAAVSLSQTGETIIVIDGVSPRRAGYSTPVRLTDIEAQDLDEEALEKAVAQAVFPEADIRGSIE
YKQYIAGILVTDLFIECQRLVKEA

Specific function: Unknown

COG id: COG1319

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789245, Length=264, Percent_Identity=48.4848484848485, Blast_Score=258, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005107
- InterPro:   IPR016169
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR002346
- InterPro:   IPR017698 [H]

Pfam domain/function: PF03450 CO_deh_flav_C; PF00941 FAD_binding_5 [H]

EC number: NA

Molecular weight: Translated: 28856; Mature: 28856

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQFLQPDNTEQALDLMQQHSACATWFAGGSKLNAKPTLTEKTIAISLDHLSLDKIELQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC
GQALHIGAMCRVQSLIDSELTPYALKQAATFIYSKHLRNQATLGGEIAAYQDESLLLPTL
CCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
MALKAHVITADASNISIEEYLQQDNRDLILQVVIPDINLVCLAFNMTRSAAGLSIVNAAV
HHHHHHEEEECCCCCCHHHHHHCCCCEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHH
SLSQTGETIIVIDGVSPRRAGYSTPVRLTDIEAQDLDEEALEKAVAQAVFPEADIRGSIE
HHCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHCCCHHHHHHHHHHHHCCCCCCCCCHH
YKQYIAGILVTDLFIECQRLVKEA
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIEQFLQPDNTEQALDLMQQHSACATWFAGGSKLNAKPTLTEKTIAISLDHLSLDKIELQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC
GQALHIGAMCRVQSLIDSELTPYALKQAATFIYSKHLRNQATLGGEIAAYQDESLLLPTL
CCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
MALKAHVITADASNISIEEYLQQDNRDLILQVVIPDINLVCLAFNMTRSAAGLSIVNAAV
HHHHHHEEEECCCCCCHHHHHHCCCCEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHH
SLSQTGETIIVIDGVSPRRAGYSTPVRLTDIEAQDLDEEALEKAVAQAVFPEADIRGSIE
HHCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHCCCHHHHHHHHHHHHCCCCCCCCCHH
YKQYIAGILVTDLFIECQRLVKEA
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]