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The map label for this gene is yjgF [C]

Identifier: 167622590

GI number: 167622590

Start: 794613

End: 795848

Strand: Direct

Name: yjgF [C]

Synonym: Shal_0650

Alternate gene names: 167622590

Gene position: 794613-795848 (Clockwise)

Preceding gene: 167622589

Following gene: 167622591

Centisome position: 15.2

GC content: 39.81

Gene sequence:

>1236_bases
ATGAACAATAACATTATAAAAGTATCAAGAAACACAGTGAATGCACCAACAAGTTCTGTCTCAACACAAACGGTAGCATT
TTCTCATTATAATAATATTTCAGCTCAATTGCCTATAGACCCTAAAACGGGCGAGATTGTCGTTGGGTGTGTAATAGACC
AAGCAAAACAGTGTTTATTAAATATCAAAACCATTATAGAAAGTATCGACCACGTAATGGACGATGTTGTTAAAATCAAT
ATATTCGTTAAAAATATCTCTGACATTGCCGCGATAGACGAAGTGTATACAAGCTTCTTCCAGGATGCGCTTCCTACACG
CACGACAGTCGCGGTGGCAGCTTTACCGATGAGTGATGCGTTAGTACAAATGGACGCACTTATTTCAAATGGGGAAGGTA
CTGCGCCACAAGCACCTTGTAAACTGATAAAAGTTTCAAGAAACACGGAAAATGCCCCTCAAGGCCTATATTCACAAACC
GTTGCTTTTTCTCATTACAATAACCTTGCATCTCAACTGCCTATCAACCCAAAGACGGGTTTGATTGTTTCTGGCGGGGT
AGCGGAGCAAACAAAGCAGTGCTTAGAAAATGTTAAATCAATTTTAGAAAGCATCGACCATGTTATGGATGATGTCGTTA
AAACAACAATATTCCTGAAAGATATCGCGGATATTGATGCTGTAAACCAAGTTTGTGCTGCATTCTTCTCAAGCTATGTT
CCAGCAAGAACAATCATTAACGTTTCAGCTTTACCTATGGATGCATTGGTACAGATTGATACCGTGGTATCACACGGAGA
TGGCACTCCTCCACAATTACCAGAAGACACCAGTTTGCTTGTGATAGAAGCGAGCAATACAGAAAATGCTCCTCATGCGC
CATACTCACATACGGTCGCTTTTTCTCATTACAACCATATCTCTGGTCAACTACCTATTGTTGCGCAAACGGGTAAAGTG
GTTGAGGGGGGGATCAGTGAGCAGACTAGACAATGCCTAGAAAATATCAAGGCAATTGTGGAAAGTGTTGACCATGTTAT
GGATGATACCGTTAAAATAAATATTCAATTGAAAAATATTGCAGATATTAATGCTGTAAATGATATTTACACCACATTCT
TCAATAGTGAACTTCCAGCAAGAACAGTCTATGGTGTCGCTGCTATTCCTATGGATGCTTTGGTACAAATTGATGCTGTT
GTTTCTAACTGTGAGGGGACACCTCCACAAGTTTAA

Upstream 100 bases:

>100_bases
AGGTAAGTCGATCTCTTAAGCTTTGGGGCGCTTTAGCCTATATAAACCACATTTTTTTAACTTAAGTTAAAAGACATTTA
GAAATAAAGGAAATATAGAT

Downstream 100 bases:

>100_bases
TAATGACTAAATCAGATATCGATTGTTAAAATTAAGGCTATCTGTCTCAATATGATAGCCTTTTATTATTTTGATACTTA
ATTGCTTTGACACTATTGTT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MNNNIIKVSRNTVNAPTSSVSTQTVAFSHYNNISAQLPIDPKTGEIVVGCVIDQAKQCLLNIKTIIESIDHVMDDVVKIN
IFVKNISDIAAIDEVYTSFFQDALPTRTTVAVAALPMSDALVQMDALISNGEGTAPQAPCKLIKVSRNTENAPQGLYSQT
VAFSHYNNLASQLPINPKTGLIVSGGVAEQTKQCLENVKSILESIDHVMDDVVKTTIFLKDIADIDAVNQVCAAFFSSYV
PARTIINVSALPMDALVQIDTVVSHGDGTPPQLPEDTSLLVIEASNTENAPHAPYSHTVAFSHYNHISGQLPIVAQTGKV
VEGGISEQTRQCLENIKAIVESVDHVMDDTVKINIQLKNIADINAVNDIYTTFFNSELPARTVYGVAAIPMDALVQIDAV
VSNCEGTPPQV

Sequences:

>Translated_411_residues
MNNNIIKVSRNTVNAPTSSVSTQTVAFSHYNNISAQLPIDPKTGEIVVGCVIDQAKQCLLNIKTIIESIDHVMDDVVKIN
IFVKNISDIAAIDEVYTSFFQDALPTRTTVAVAALPMSDALVQMDALISNGEGTAPQAPCKLIKVSRNTENAPQGLYSQT
VAFSHYNNLASQLPINPKTGLIVSGGVAEQTKQCLENVKSILESIDHVMDDVVKTTIFLKDIADIDAVNQVCAAFFSSYV
PARTIINVSALPMDALVQIDTVVSHGDGTPPQLPEDTSLLVIEASNTENAPHAPYSHTVAFSHYNHISGQLPIVAQTGKV
VEGGISEQTRQCLENIKAIVESVDHVMDDTVKINIQLKNIADINAVNDIYTTFFNSELPARTVYGVAAIPMDALVQIDAV
VSNCEGTPPQV
>Mature_411_residues
MNNNIIKVSRNTVNAPTSSVSTQTVAFSHYNNISAQLPIDPKTGEIVVGCVIDQAKQCLLNIKTIIESIDHVMDDVVKIN
IFVKNISDIAAIDEVYTSFFQDALPTRTTVAVAALPMSDALVQMDALISNGEGTAPQAPCKLIKVSRNTENAPQGLYSQT
VAFSHYNNLASQLPINPKTGLIVSGGVAEQTKQCLENVKSILESIDHVMDDVVKTTIFLKDIADIDAVNQVCAAFFSSYV
PARTIINVSALPMDALVQIDTVVSHGDGTPPQLPEDTSLLVIEASNTENAPHAPYSHTVAFSHYNHISGQLPIVAQTGKV
VEGGISEQTRQCLENIKAIVESVDHVMDDTVKINIQLKNIADINAVNDIYTTFFNSELPARTVYGVAAIPMDALVQIDAV
VSNCEGTPPQV

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=127, Percent_Identity=38.5826771653543, Blast_Score=89, Evalue=7e-18,
Organism=Escherichia coli, GI87082396, Length=119, Percent_Identity=41.1764705882353, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082213, Length=120, Percent_Identity=31.6666666666667, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=129, Percent_Identity=41.0852713178295, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71982068, Length=129, Percent_Identity=41.0852713178295, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25148896, Length=129, Percent_Identity=41.0852713178295, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=99, Percent_Identity=34.3434343434343, Blast_Score=73, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6322138, Length=108, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=38.4, Blast_Score=95, Evalue=8e-20,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 44194; Mature: 44194

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNIIKVSRNTVNAPTSSVSTQTVAFSHYNNISAQLPIDPKTGEIVVGCVIDQAKQCLL
CCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCEEEEEHHHHHHHHHH
NIKTIIESIDHVMDDVVKINIFVKNISDIAAIDEVYTSFFQDALPTRTTVAVAALPMSDA
HHHHHHHHHHHHHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHH
LVQMDALISNGEGTAPQAPCKLIKVSRNTENAPQGLYSQTVAFSHYNNLASQLPINPKTG
HHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
LIVSGGVAEQTKQCLENVKSILESIDHVMDDVVKTTIFLKDIADIDAVNQVCAAFFSSYV
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PARTIINVSALPMDALVQIDTVVSHGDGTPPQLPEDTSLLVIEASNTENAPHAPYSHTVA
CHHHEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEE
FSHYNHISGQLPIVAQTGKVVEGGISEQTRQCLENIKAIVESVDHVMDDTVKINIQLKNI
EECCCCCCCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
ADINAVNDIYTTFFNSELPARTVYGVAAIPMDALVQIDAVVSNCEGTPPQV
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNNNIIKVSRNTVNAPTSSVSTQTVAFSHYNNISAQLPIDPKTGEIVVGCVIDQAKQCLL
CCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCEEEEEHHHHHHHHHH
NIKTIIESIDHVMDDVVKINIFVKNISDIAAIDEVYTSFFQDALPTRTTVAVAALPMSDA
HHHHHHHHHHHHHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHH
LVQMDALISNGEGTAPQAPCKLIKVSRNTENAPQGLYSQTVAFSHYNNLASQLPINPKTG
HHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
LIVSGGVAEQTKQCLENVKSILESIDHVMDDVVKTTIFLKDIADIDAVNQVCAAFFSSYV
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PARTIINVSALPMDALVQIDTVVSHGDGTPPQLPEDTSLLVIEASNTENAPHAPYSHTVA
CHHHEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEE
FSHYNHISGQLPIVAQTGKVVEGGISEQTRQCLENIKAIVESVDHVMDDTVKINIQLKNI
EECCCCCCCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
ADINAVNDIYTTFFNSELPARTVYGVAAIPMDALVQIDAVVSNCEGTPPQV
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]