Click here to switch to the map view.

The map label for this gene is ypzJ [H]

Identifier: 167622584

GI number: 167622584

Start: 785126

End: 785332

Strand: Direct

Name: ypzJ [H]

Synonym: Shal_0644

Alternate gene names: 167622584

Gene position: 785126-785332 (Clockwise)

Preceding gene: 167622583

Following gene: 167622587

Centisome position: 15.02

GC content: 33.33

Gene sequence:

>207_bases
ATGTCTAATAATTGGCAATGTCCCAAATGTGATTGCAGGGATTATGATACGGATACAATTGCAACTACAGGTAGTGGTTG
GTCTAAGATATTTGATATGCAAAATCGAAAATTCACAGCTGTAATATGTTCTAATTGTACTTATACAGAATTTTACCGGG
GTAAAACTAGTACTTTGGGTAATATTTTCGACTTGTTCACTAATTAG

Upstream 100 bases:

>100_bases
GGTTGGCTGCGCTGTACCTCGCAGATTTTAGCCAATCAAGTTGCTCCCGCTGAGTTGGGGATTATGTGTATTAGAGTTAT
CATCAAAACAAGGAGTTAAT

Downstream 100 bases:

>100_bases
TCAATACACATAAAAAATGACTATGGCGTCAATAGTTTATTTGCACAAGTATTCTCATCCCACATGGTGTCATCTCTGAA
AAATAGATAGAAAAAGCTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MSNNWQCPKCDCRDYDTDTIATTGSGWSKIFDMQNRKFTAVICSNCTYTEFYRGKTSTLGNIFDLFTN

Sequences:

>Translated_68_residues
MSNNWQCPKCDCRDYDTDTIATTGSGWSKIFDMQNRKFTAVICSNCTYTEFYRGKTSTLGNIFDLFTN
>Mature_67_residues
SNNWQCPKCDCRDYDTDTIATTGSGWSKIFDMQNRKFTAVICSNCTYTEFYRGKTSTLGNIFDLFTN

Specific function: Unknown

COG id: COG3478

COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018652 [H]

Pfam domain/function: PF09855 DUF2082 [H]

EC number: NA

Molecular weight: Translated: 7828; Mature: 7697

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00202 RUBREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
7.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNWQCPKCDCRDYDTDTIATTGSGWSKIFDMQNRKFTAVICSNCTYTEFYRGKTSTLG
CCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCEECCCCCCHH
NIFDLFTN
HHHHHHCC
>Mature Secondary Structure 
SNNWQCPKCDCRDYDTDTIATTGSGWSKIFDMQNRKFTAVICSNCTYTEFYRGKTSTLG
CCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCEECCCCCCHH
NIFDLFTN
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]