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The map label for this gene is ygeV [H]

Identifier: 167622574

GI number: 167622574

Start: 765787

End: 767454

Strand: Reverse

Name: ygeV [H]

Synonym: Shal_0634

Alternate gene names: 167622574

Gene position: 767454-765787 (Counterclockwise)

Preceding gene: 167622580

Following gene: 167622571

Centisome position: 14.68

GC content: 43.23

Gene sequence:

>1668_bases
GTGCTGCAGCTCGATGCTGAAGTCGTAGATGCTGATCTTGTGCGTATTGCGGGTACTGGTCCCTACAATAAGTCTTTAGG
TAAAAAGCTCAATAATAGCTCGCGGATTTTCAGATATATTATTGAAACTAAGCAGAGCAAAGTGGTGGTAAAAACGCGTT
CAGATCCTATATGTGAAGGCTGTTCCAACCATGATAATTGCCGCGAAACCGCCTTTCTTGGCGTACCTATTATGCTCGAT
GACCGCTGCATAGGGGTGGTCAGCTTGGTGGCGTTTAATCAAGAGTCTGGTGACAGAATTAAAAATAATATTCAGCTGTT
TCTTGATTATATTGAGCATATTTCCCAGCTCGTTGTTATCAAAGTTTCTGAGGCGAAGAAGAATGGATCTAATCTCGATG
AGGTTTTTTCTAACCTGATCAACAATATGGATCAAGGTGTACTGGTACTTGACGATGCTAACCGTGTACTTCATGGTAAT
CCTCAAGCTTTGGACATATTGAATATCAGTCACAGTGAACTAGCGCTTATTGAAGTCAATATCCAGCCCTTATTACCCCA
TAACAATAAATTAAAAGGACCGGAGCAACACATAGTCACCTTAGGTGAATGCCAAGAGTTAGTGGTTGGTCAATTTCATG
TTATCGCCAATAAACAGCTGTTTTTGATGTCCTTCCATCAACCCAACACCTCTATCACTGCCGATGACACACCAGCGAGT
CCATTTTCCAATATTATTGGTGAATCGAATAAGATGCTGCAATTGAAAACCTTAATTGCGCGGGTCGCTAAGAGTCCATC
GAGTATCTTAATCAGTGGTGAGAGTGGCACCGGTAAAGAGGTGTTTGCCCAGGCTATCCATAAATACAGTGATCGCAGTG
AACAGAATTTTGTCGCTATTAACTGTGCTGCCATTCCAGAGCAATTACTTGAAAGTGAGCTGTTTGGTTATGTAAAAGGT
GCCTTTACCGGCGCGCTTACCAAGGGCAAGGTTGGCTTAATTCAGGCGGCCAACAATGGCACTCTGTTCCTTGATGAAAT
TGGCGATATGTCGATGACACTGCAGTCTAAGTTGCTACGAGTGCTAGAGGAAAGAGAGGTGATGCCACTGGGTTCTAATG
CCTCTACCCCTGTAAATATTCGTATTATTTCAGCCACTAACCGCAACTTCGCCGAGATGATAGCTGCAAATGAATTTCGT
GAAGATCTCTATTATCGCCTCAATGTGATCCCGCTATATTTACCCGCTCTACGAGAGCGAGAAGGCGATATCGAACTGCT
AGTCTATTACTTCCTCGACAGGCACTCTCAGGCTATAGGTACCTGTTATCCAGGTATTACAGAGGAGGTGATTAATAGCC
TTAATGCTTACCACTGGCCGGGAAATATTCGCGAGCTAAGCAACCTCGTTGAATATCTAGTGAACATCGTCCCCAGTGGC
GACCAAATTGATATCGACTTATTGCCGCCCTATTTTGATACTCCACAAGAGAGCTGCACACCTATGGTGAGTATTAATGA
TGATAACGTGAGTCTTGAGGAGATGGAGAGAATTAAAATTGAAGATAGCATCAATAGATTAGGGAACCGCAAGCTAGTAG
CAAAAGAGCTAGGCATTGGCGTCGCTACCCTATACAGAAAGTTAAAAAAATATCGCCTATCTTGCTAA

Upstream 100 bases:

>100_bases
TATAAATAAAAATAAGAACACAGCATTGAATACTACCTATATGTCTGAATTAATGAGGCTTCAGCCGACTATAATACAAT
TCACGGAGAAACTATCCACG

Downstream 100 bases:

>100_bases
TTTTTAATTAATTTCTCAAGGTACTTGGAGTCTATCGGAACGAAAAGTTACTATAGAATTCAAGTACCTCTTTAACCGTT
GCTTCCATCGCCATTCTACC

Product: putative sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEGCSNHDNCRETAFLGVPIMLD
DRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVIKVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGN
PQALDILNISHSELALIEVNIQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS
PFSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVAINCAAIPEQLLESELFGYVKG
AFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLLRVLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFR
EDLYYRLNVIPLYLPALREREGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPSG
DQIDIDLLPPYFDTPQESCTPMVSINDDNVSLEEMERIKIEDSINRLGNRKLVAKELGIGVATLYRKLKKYRLSC

Sequences:

>Translated_555_residues
MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEGCSNHDNCRETAFLGVPIMLD
DRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVIKVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGN
PQALDILNISHSELALIEVNIQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS
PFSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVAINCAAIPEQLLESELFGYVKG
AFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLLRVLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFR
EDLYYRLNVIPLYLPALREREGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPSG
DQIDIDLLPPYFDTPQESCTPMVSINDDNVSLEEMERIKIEDSINRLGNRKLVAKELGIGVATLYRKLKKYRLSC
>Mature_555_residues
MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEGCSNHDNCRETAFLGVPIMLD
DRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVIKVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGN
PQALDILNISHSELALIEVNIQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS
PFSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVAINCAAIPEQLLESELFGYVKG
AFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLLRVLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFR
EDLYYRLNVIPLYLPALREREGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPSG
DQIDIDLLPPYFDTPQESCTPMVSINDDNVSLEEMERIKIEDSINRLGNRKLVAKELGIGVATLYRKLKKYRLSC

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=563, Percent_Identity=53.6412078152753, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI1788550, Length=347, Percent_Identity=42.3631123919308, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI1788905, Length=235, Percent_Identity=52.7659574468085, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI87082117, Length=244, Percent_Identity=49.1803278688525, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI1790437, Length=319, Percent_Identity=44.5141065830721, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI1789087, Length=316, Percent_Identity=40.8227848101266, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI1790299, Length=333, Percent_Identity=38.7387387387387, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI1786524, Length=327, Percent_Identity=40.6727828746177, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI87082152, Length=329, Percent_Identity=40.1215805471125, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1787583, Length=323, Percent_Identity=36.2229102167183, Blast_Score=192, Evalue=6e-50,
Organism=Escherichia coli, GI87081872, Length=321, Percent_Identity=37.3831775700935, Blast_Score=188, Evalue=9e-49,
Organism=Escherichia coli, GI1789828, Length=296, Percent_Identity=33.445945945946, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081858, Length=434, Percent_Identity=27.1889400921659, Blast_Score=135, Evalue=6e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 61747; Mature: 61747

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEG
CCCCCCHHHCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
CSNHDNCRETAFLGVPIMLDDRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVI
CCCCCCCHHHEEECCEEEECCCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHEEEE
KVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGNPQALDILNISHSELALIEVN
EEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEECCCCCEEEEEECCCCCEEEEEEE
IQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS
EEEECCCCCCCCCCHHHEEEHHHHHHHHHCCEEEEECCEEEEEEECCCCCCEECCCCCCC
PFSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVAI
HHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
NCAAIPEQLLESELFGYVKGAFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLLR
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHH
VLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFREDLYYRLNVIPLYLPALRER
HHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEHEEEHHHHHCC
EGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPSG
CCCCEEEEEEHHHHCCCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
DQIDIDLLPPYFDTPQESCTPMVSINDDNVSLEEMERIKIEDSINRLGNRKLVAKELGIG
CEEEEEECCCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCC
VATLYRKLKKYRLSC
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEG
CCCCCCHHHCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
CSNHDNCRETAFLGVPIMLDDRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVI
CCCCCCCHHHEEECCEEEECCCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHEEEE
KVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGNPQALDILNISHSELALIEVN
EEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEECCCCCEEEEEECCCCCEEEEEEE
IQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS
EEEECCCCCCCCCCHHHEEEHHHHHHHHHCCEEEEECCEEEEEEECCCCCCEECCCCCCC
PFSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVAI
HHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
NCAAIPEQLLESELFGYVKGAFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLLR
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHH
VLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFREDLYYRLNVIPLYLPALRER
HHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEHEEEHHHHHCC
EGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPSG
CCCCEEEEEEHHHHCCCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
DQIDIDLLPPYFDTPQESCTPMVSINDDNVSLEEMERIKIEDSINRLGNRKLVAKELGIG
CEEEEEECCCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCC
VATLYRKLKKYRLSC
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]