| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is uvrA [H]
Identifier: 167622571
GI number: 167622571
Start: 760362
End: 763205
Strand: Reverse
Name: uvrA [H]
Synonym: Shal_0631
Alternate gene names: 167622571
Gene position: 763205-760362 (Counterclockwise)
Preceding gene: 167622574
Following gene: 167622570
Centisome position: 14.6
GC content: 47.86
Gene sequence:
>2844_bases ATGGAATATATTGAAGTTCGTGGTGCTCGTACCCACAATCTTAAAAACATCAACCTGACTATTCCTCGTAACAAGCTAAT TGTTATCACTGGACTATCTGGGTCAGGCAAATCTTCTCTTGCTTTTGATACGCTATACGCTGAAGGGCAACGACGTTATG TCGAGTCATTATCAGCTTATGCGCGTCAATTCTTAAGCTTGATGGAAAAGCCTGATGTTGACCATATTGAAGGTTTAAGC CCTGCAATTTCTATCGAGCAGAAGTCCACATCTCATAACCCGCGTTCAACTGTGGGTACCATTACTGAAATCTACGATTA CTTAAGACTGCTGTTTGCCCGTGTAGGTGAACCGCGTTGTCCGACTCATGGCAAACCGCTAGCGGCACAGACCATCAGCC AGATGGTTGATAAGGTACTAGAACTGCCTGAGGGCAGCCGTCAGATGCTATTAGCTCCTGTCGTTAATAACCGAAAAGGC GAACATGTAAAGCTATTAGAGAGTCTATCCGCACAGGGCTATATTCGCGCTCGAATCGATGGTGAAGTATGGGACTTAAC CGATCCACCGGAACTTGATCTGCATGTAAAGCATACTATCGAAGTGGTGGTCGACCGCTTTAAAGTACGTGAAGACATGA AGCAACGTTTAGCCGAGTCATTTGAAACTGCGCTCGAACTGTCTGGCGGCATAGCCACGATTACCAGCATGGAACCCGTC GAAGGTAAAGCTAAGCCAGAAGAGCAAGTTTTCTCGGCTAACTTCGCCTGCCCAGTCTGTGGCTATTCAATGGCCGAGCT TGAACCAAGGATCTTCTCATTTAATAATCCAGCAGGTGCTTGCCAAACGTGTGACGGTCTTGGGGTACAGCAATTTTTCG ATCCTGAGCGGGTGATCACTAATACTGAATTATCACTCGCTGGCGGCGCGATCCGTGGTTGGGATCGACGTAATTTTTAT TATTTCCAAATGCTTACCTCATTAGCCGATCACTACAAATTTGATATCGAAAAGCCATTCGAACAGCTAAGTGATGAAGC ACGCAAAATCGTGCTTTATGGTTCAGGTAATCAGAGCATCGCGTTTAAATACATTAACGACCGTGGTGACGTTGTTGTCA GAAACCATCCCTTCGAAGGGATCTTAAACAACATGGACAGGCGCTATCGCGAAACCGAATCCAATGCAGTCCGTGAAGAG CTAACCAAGTTTATCAACACTCAGTCGTGTCAAAGCTGCGGTGGCTCTCGTCTGCGTGAAGAGGCCCGTAACGTATTTAT TGAAGAGCTTAATCTCCCAGTATTGACCCAATGGTCTATCGGTGAAGCCGCACAATACTTCGAGCAACTCGAACTCACGG GCCAACGTGCGCAGATAGCCGATAAGATCTTAAAAGAGGTACGGGATCGTCTTGGCTTCTTAGTTAATGTCGGTTTGAAC TACTTAAGCTTATCACGCTCTGCCGATACCCTCTCTGGTGGTGAAGCCCAGCGTATTCGCCTAGCCAGCCAGATTGGAGC AGGCCTTGTTGGCGTGATGTATGTACTCGATGAACCCTCAATTGGCTTGCATCAGCGCGATAATGAACGCTTACTACAAA CCCTTATCCATCTGCGTGATTTAGGTAATACGGTGATCGTAGTTGAGCACGATGAGGACGCGATTCGCATGGCGGACCAC GTTATCGATATCGGCCCCGGCGCTGGCGTTCATGGCGGCCAAGTTATCGGTGAAGGGACCCTGCAAGACCTGCTCGACTG TAAAGAGTCGATCACAGGTCAGTATCTGTCGGGTGAAAAGCAAATTCACATCAAGACTGAGCGTACTCAATACGATCCAA ACAAGCTGATAGAGCTATTTGGGGCATCGGGAAATAACCTTAAAGATGTCGATCTGCAAATTCCTGTGGGCTTGTTCACC TGTATCACTGGCGTCTCAGGGTCTGGTAAGTCGACACTGATCAATGACACCTTCTACAAGATTGCTCATATGCAGTTAAA TGGTGCAACGGTTGATGAACCTTCTCCTTATAAGAAAGTGGTCGGCATGGACCATTGCGATAAGGTGGTCGATATCGATC AGAGCCCGATTGGCCGTACACCACGCTCAAATCCCGCCACCTATACTGGCATTTTCACACCAATTCGTGAGTTGTTCGCC GCAACCCAAGAGTCGCGAACCCGCGGTTACCAACCGGGCCGTTTCTCATTTAACGTCAAAGGCGGACGCTGTGAGGCTTG CCAGGGTGATGGTTTAATCAAGGTGGAAATGCACTTTCTACCCGATGTGTATGTGCCATGTGACAGCTGTAAGGGTCAGC GCTATAACCGCGAAACCTTAGATGTACGCTTTAAGGGCAAGAACATCCACGAAGTGCTGCAGATGACTGTTGAAGAAGCG CGTCCGTTCTTCGATGCGATTCCTGCCGTGGCTCGAAAATTACAGACCTTAATGGATGTGGGTCTGTCTTATATCCGCTT GGGTCAAAGTGCGACGACCCTATCGGGCGGTGAAGCGCAGCGAGTTAAACTTGCCAAGGAACTCTCTAAGCGTGATACCG GTAAAACCTTGTATATTCTTGATGAACCTACAACCGGATTGCATTTTGCCGATATCCAACTGTTATTGGATGTGTTGCAT CGCCTCAAATCACACGGCAACACTATCGTAGTGATTGAGCATAACTTAGATGTAATAAAGACGGCAGATTGGATTATCGA TCTCGGTCCAGAGGGGGGTTCTGGTGGCGGTACGATTTTGGTTGCAGGTACACCTGAAGAGGTTGCAGAGCATACCGAGT CGCATACAGCACGCTTCTTAAAGCCACTTTTAAGCAAAGCATAG
Upstream 100 bases:
>100_bases TTGATTATCACCTACAATTGATAACCAGTTCTGTCTGTTTCCTGTGGCGATTTTGTGAGATACTTAACCACTTTTTTCGG CTTTGAGATCTGAACGCTAG
Downstream 100 bases:
>100_bases AGCCAGTTAGAAACTCGATGCACTTTAGAAACCTCTTCTTAAGCACAAGCCTAGTGATGATGCTAGGCTTGCTGCTTATC GCCGTATTCGATCCCCTCAT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 947; Mature: 947
Protein sequence:
>947_residues MEYIEVRGARTHNLKNINLTIPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGKPLAAQTISQMVDKVLELPEGSRQMLLAPVVNNRKG EHVKLLESLSAQGYIRARIDGEVWDLTDPPELDLHVKHTIEVVVDRFKVREDMKQRLAESFETALELSGGIATITSMEPV EGKAKPEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVITNTELSLAGGAIRGWDRRNFY YFQMLTSLADHYKFDIEKPFEQLSDEARKIVLYGSGNQSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREE LTKFINTQSCQSCGGSRLREEARNVFIEELNLPVLTQWSIGEAAQYFEQLELTGQRAQIADKILKEVRDRLGFLVNVGLN YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRMADH VIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEKQIHIKTERTQYDPNKLIELFGASGNNLKDVDLQIPVGLFT CITGVSGSGKSTLINDTFYKIAHMQLNGATVDEPSPYKKVVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGQRYNRETLDVRFKGKNIHEVLQMTVEEA RPFFDAIPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLH RLKSHGNTIVVIEHNLDVIKTADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLSKA
Sequences:
>Translated_947_residues MEYIEVRGARTHNLKNINLTIPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGKPLAAQTISQMVDKVLELPEGSRQMLLAPVVNNRKG EHVKLLESLSAQGYIRARIDGEVWDLTDPPELDLHVKHTIEVVVDRFKVREDMKQRLAESFETALELSGGIATITSMEPV EGKAKPEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVITNTELSLAGGAIRGWDRRNFY YFQMLTSLADHYKFDIEKPFEQLSDEARKIVLYGSGNQSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREE LTKFINTQSCQSCGGSRLREEARNVFIEELNLPVLTQWSIGEAAQYFEQLELTGQRAQIADKILKEVRDRLGFLVNVGLN YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRMADH VIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEKQIHIKTERTQYDPNKLIELFGASGNNLKDVDLQIPVGLFT CITGVSGSGKSTLINDTFYKIAHMQLNGATVDEPSPYKKVVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGQRYNRETLDVRFKGKNIHEVLQMTVEEA RPFFDAIPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLH RLKSHGNTIVVIEHNLDVIKTADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLSKA >Mature_947_residues MEYIEVRGARTHNLKNINLTIPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGKPLAAQTISQMVDKVLELPEGSRQMLLAPVVNNRKG EHVKLLESLSAQGYIRARIDGEVWDLTDPPELDLHVKHTIEVVVDRFKVREDMKQRLAESFETALELSGGIATITSMEPV EGKAKPEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVITNTELSLAGGAIRGWDRRNFY YFQMLTSLADHYKFDIEKPFEQLSDEARKIVLYGSGNQSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREE LTKFINTQSCQSCGGSRLREEARNVFIEELNLPVLTQWSIGEAAQYFEQLELTGQRAQIADKILKEVRDRLGFLVNVGLN YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRMADH VIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEKQIHIKTERTQYDPNKLIELFGASGNNLKDVDLQIPVGLFT CITGVSGSGKSTLINDTFYKIAHMQLNGATVDEPSPYKKVVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGQRYNRETLDVRFKGKNIHEVLQMTVEEA RPFFDAIPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLH RLKSHGNTIVVIEHNLDVIKTADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLSKA
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=944, Percent_Identity=78.0720338983051, Blast_Score=1536, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 105152; Mature: 105152
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYIEVRGARTHNLKNINLTIPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGKPLAAQTISQMVDKVLELPEGSRQMLLAPVVNNRKGEHVKLLESLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCHHHHHHHHCCCCEEEEEEC GEVWDLTDPPELDLHVKHTIEVVVDRFKVREDMKQRLAESFETALELSGGIATITSMEPV CEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC EGKAKPEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIT CCCCCCHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCHHHEE NTELSLAGGAIRGWDRRNFYYFQMLTSLADHYKFDIEKPFEQLSDEARKIVLYGSGNQSI CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCEE AFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELTKFINTQSCQSCGGSRLRE EEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH EARNVFIEELNLPVLTQWSIGEAAQYFEQLELTGQRAQIADKILKEVRDRLGFLVNVGLN HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEHCCCCH YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRD HEEECCCCCCCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHH LGNTVIVVEHDEDAIRMADHVIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEK CCCEEEEEECCCCHHHHHHHHEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCE QIHIKTERTQYDPNKLIELFGASGNNLKDVDLQIPVGLFTCITGVSGSGKSTLINDTFYK EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEECHHHEE IAHMQLNGATVDEPSPYKKVVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA EEEEEECCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGQRYNRETL HHHHHHHCCCCCCCEEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCEE DVRFKGKNIHEVLQMTVEEARPFFDAIPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQ EEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHH RVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIK HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE TADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLSKA ECCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEYIEVRGARTHNLKNINLTIPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGKPLAAQTISQMVDKVLELPEGSRQMLLAPVVNNRKGEHVKLLESLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCHHHHHHHHCCCCEEEEEEC GEVWDLTDPPELDLHVKHTIEVVVDRFKVREDMKQRLAESFETALELSGGIATITSMEPV CEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC EGKAKPEEQVFSANFACPVCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIT CCCCCCHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCHHHEE NTELSLAGGAIRGWDRRNFYYFQMLTSLADHYKFDIEKPFEQLSDEARKIVLYGSGNQSI CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCEE AFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELTKFINTQSCQSCGGSRLRE EEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH EARNVFIEELNLPVLTQWSIGEAAQYFEQLELTGQRAQIADKILKEVRDRLGFLVNVGLN HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEHCCCCH YLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRD HEEECCCCCCCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHH LGNTVIVVEHDEDAIRMADHVIDIGPGAGVHGGQVIGEGTLQDLLDCKESITGQYLSGEK CCCEEEEEECCCCHHHHHHHHEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCE QIHIKTERTQYDPNKLIELFGASGNNLKDVDLQIPVGLFTCITGVSGSGKSTLINDTFYK EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEECHHHEE IAHMQLNGATVDEPSPYKKVVGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFA EEEEEECCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH ATQESRTRGYQPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGQRYNRETL HHHHHHHCCCCCCCEEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCEE DVRFKGKNIHEVLQMTVEEARPFFDAIPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQ EEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHH RVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIK HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE TADWIIDLGPEGGSGGGTILVAGTPEEVAEHTESHTARFLKPLLSKA ECCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]