BacMap

Definition	Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession	NC_010334
Length	5,226,917

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The map label for this gene is ydfG [C]

Identifier: 167622557

GI number: 167622557

Start: 745325

End: 746044

Strand: Reverse

Name: ydfG [C]

Synonym: Shal_0617

Alternate gene names: 167622557

Gene position: 746044-745325 (Counterclockwise)

Preceding gene: 167622560

Following gene: 167622556

Centisome position: 14.27

GC content: 48.61

Gene sequence:

>720_bases
ATGAAACAACTAATCGTAATTACAGGTGCATCTTCTGGTATTGGCGCGGCCATGGCTAAAGCCTTCAGCGCAAAAGGCCA
CCCTCTACTGTTATTGGCACGCCGCATTGAGCCGATGCAAGCATTAGGCTTAGATAACTGCCTAGCCGTTAGCGTTGATG
TAACAGATGCTGATGCCATGAAAGCGGCTATTGCAAGCGCTGAAGCTAAATTTGGTCCAGTTGGCTGCTTAATCAATAAC
GCTGGCGTAATGCTACTCGGCGCTGCAGATGTACAAGATCCTGCTGAGTGGAGCCGTATGCTTAACATCAACGTGATGGG
CGTACTCAACGGTATTCATGCAGTGCTTGCCGATATGAAGGCACGTAAAACAGGCACTATCATCAACGTCAGCTCAATAG
CAGGCCGCAAGACGTTCCCGAACCACTCAGCTTATTGCGCTACTAAGTTTGCAGTGCACGCTTTAACAGAGAACATTCGT
GAAGAGGTGGCAATGGATGATGTTCGTATGATCACTATCGCACCAGGTGCCGTAGAAACTGAACTACTGAGCCACACCAC
TAACGATGATATCAAAGCGGGCTACGAAGATTGGAAACAGCATATGGGTGGGGTTATTGCACCTGAAACCATTGCCGAAG
CAGCGCTGTTTGCCTTTGAGCAACCACAAAATGTGTGTGTACGTGAAATCGTATTAGCGGCGACACGTCAAGAGCCATAG

Upstream 100 bases:

>100_bases
AGTCATATGTAAACAATCATATTCTCTATAGATTATATATCAACAATATTGGGTTCGTTAGAATACTCACCAATAAAGAC
CCCCCCTATTTGAGGCTGAT

Downstream 100 bases:

>100_bases
GCTCTGCTAATAGCCACGGCTTTCATCTGTTCATTTAAGGTCCCTTCAGCGATGCTGAAGGGACCTTTTGTTTACCTAAT
GTCAACACTCAACTATCACT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKQLIVITGASSGIGAAMAKAFSAKGHPLLLLARRIEPMQALGLDNCLAVSVDVTDADAMKAAIASAEAKFGPVGCLINN
AGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMKARKTGTIINVSSIAGRKTFPNHSAYCATKFAVHALTENIR
EEVAMDDVRMITIAPGAVETELLSHTTNDDIKAGYEDWKQHMGGVIAPETIAEAALFAFEQPQNVCVREIVLAATRQEP

Sequences:

>Translated_239_residues
MKQLIVITGASSGIGAAMAKAFSAKGHPLLLLARRIEPMQALGLDNCLAVSVDVTDADAMKAAIASAEAKFGPVGCLINN
AGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMKARKTGTIINVSSIAGRKTFPNHSAYCATKFAVHALTENIR
EEVAMDDVRMITIAPGAVETELLSHTTNDDIKAGYEDWKQHMGGVIAPETIAEAALFAFEQPQNVCVREIVLAATRQEP
>Mature_239_residues
MKQLIVITGASSGIGAAMAKAFSAKGHPLLLLARRIEPMQALGLDNCLAVSVDVTDADAMKAAIASAEAKFGPVGCLINN
AGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMKARKTGTIINVSSIAGRKTFPNHSAYCATKFAVHALTENIR
EEVAMDDVRMITIAPGAVETELLSHTTNDDIKAGYEDWKQHMGGVIAPETIAEAALFAFEQPQNVCVREIVLAATRQEP

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=28.8537549407115, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI20149619, Length=243, Percent_Identity=30.0411522633745, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI4503817, Length=210, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=28.8659793814433, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI40254992, Length=226, Percent_Identity=28.7610619469027, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI4557649, Length=198, Percent_Identity=29.2929292929293, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI4758504, Length=194, Percent_Identity=32.4742268041237, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI31542939, Length=232, Percent_Identity=27.1551724137931, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI19743808, Length=221, Percent_Identity=28.5067873303167, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI22507405, Length=193, Percent_Identity=31.0880829015544, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7705925, Length=217, Percent_Identity=29.9539170506912, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI150247226, Length=204, Percent_Identity=27.4509803921569, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI50726952, Length=188, Percent_Identity=28.7234042553192, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI223718074, Length=248, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI157739938, Length=190, Percent_Identity=27.3684210526316, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI166795268, Length=205, Percent_Identity=27.8048780487805, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI44680136, Length=184, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI44680133, Length=184, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI17738292, Length=184, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI83715985, Length=174, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=28.2352941176471, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI226371731, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI7705855, Length=193, Percent_Identity=26.4248704663212, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=26.5957446808511, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI40548397, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI214010158, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI214010156, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI22758144, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787820, Length=241, Percent_Identity=29.4605809128631, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=38.5869565217391, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786812, Length=238, Percent_Identity=26.890756302521, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786701, Length=231, Percent_Identity=24.6753246753247, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082160, Length=185, Percent_Identity=26.4864864864865, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI2367175, Length=189, Percent_Identity=26.984126984127, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789208, Length=181, Percent_Identity=27.6243093922652, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787905, Length=222, Percent_Identity=27.9279279279279, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=226, Percent_Identity=30.0884955752212, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=205, Percent_Identity=30.7317073170732, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=27.2251308900524, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=232, Percent_Identity=29.3103448275862, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=238, Percent_Identity=27.7310924369748, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=244, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=251, Percent_Identity=25.8964143426295, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=232, Percent_Identity=27.1551724137931, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=196, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=28.7179487179487, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=218, Percent_Identity=27.0642201834862, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=27.979274611399, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=189, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=27.8606965174129, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=201, Percent_Identity=27.8606965174129, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=257, Percent_Identity=33.0739299610895, Blast_Score=124, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=28.8659793814433, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=188, Percent_Identity=30.8510638297872, Blast_Score=76, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=192, Percent_Identity=27.0833333333333, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24641232, Length=244, Percent_Identity=29.9180327868852, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281364494, Length=250, Percent_Identity=30.4, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI21357041, Length=206, Percent_Identity=30.0970873786408, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24663911, Length=245, Percent_Identity=32.6530612244898, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24641388, Length=249, Percent_Identity=29.718875502008, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=29.0983606557377, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=35.6756756756757, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648944, Length=247, Percent_Identity=29.9595141700405, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI116007234, Length=244, Percent_Identity=29.9180327868852, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=30.4123711340206, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21358495, Length=227, Percent_Identity=29.0748898678414, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571526, Length=207, Percent_Identity=30.4347826086957, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24643142, Length=195, Percent_Identity=28.7179487179487, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=30.8943089430894, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=30.6878306878307, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24648693, Length=250, Percent_Identity=27.6, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21355889, Length=250, Percent_Identity=27.6, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007238, Length=173, Percent_Identity=31.7919075144509, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI116007232, Length=173, Percent_Identity=33.5260115606936, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21356301, Length=234, Percent_Identity=28.2051282051282, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24639444, Length=235, Percent_Identity=28.0851063829787, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076933, Length=203, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584748, Length=203, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17737361, Length=195, Percent_Identity=29.2307692307692, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640492, Length=191, Percent_Identity=27.7486910994764, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=27.1794871794872, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=27.1794871794872, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=25.531914893617, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=25.4437869822485, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25307; Mature: 25307

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLIVITGASSGIGAAMAKAFSAKGHPLLLLARRIEPMQALGLDNCLAVSVDVTDADAM
CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEHHCCHHHHCCCCCEEEEEEECCCHHHH
KAAIASAEAKFGPVGCLINNAGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMK
HHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHCEEHHHHHHHHHHHHHHHH
ARKTGTIINVSSIAGRKTFPNHSAYCATKFAVHALTENIREEVAMDDVRMITIAPGAVET
HCCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
ELLSHTTNDDIKAGYEDWKQHMGGVIAPETIAEAALFAFEQPQNVCVREIVLAATRQEP
HHHHCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKQLIVITGASSGIGAAMAKAFSAKGHPLLLLARRIEPMQALGLDNCLAVSVDVTDADAM
CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEHHCCHHHHCCCCCEEEEEEECCCHHHH
KAAIASAEAKFGPVGCLINNAGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMK
HHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHCEEHHHHHHHHHHHHHHHH
ARKTGTIINVSSIAGRKTFPNHSAYCATKFAVHALTENIREEVAMDDVRMITIAPGAVET
HCCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
ELLSHTTNDDIKAGYEDWKQHMGGVIAPETIAEAALFAFEQPQNVCVREIVLAATRQEP
HHHHCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA