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The map label for this gene is rbsB [H]

Identifier: 167622521

GI number: 167622521

Start: 697745

End: 698644

Strand: Direct

Name: rbsB [H]

Synonym: Shal_0581

Alternate gene names: 167622521

Gene position: 697745-698644 (Clockwise)

Preceding gene: 167622520

Following gene: 167622522

Centisome position: 13.35

GC content: 49.11

Gene sequence:

>900_bases
ATGAAACAACCTATTAACAAGAAAGTGTCAGTGATGTTAGCGGCAGCGCTACTGTCGAGCTCGGTATCTTTTGGCGCTAG
CGCCCAAGATGCCATCGCTATCGTGCTGTCGACGATGAATAACCCTTTTTTCGTGACCATGAAAGATGGTGCTGAAGCCA
AGGCCAAAGAGCTTGGGTATAAGCTGATTGCACTGGACTCGCAAAACGACCCAAGCAAAGAGCTGGCAAACGTTGAAGAT
CTCACCATGCGCGGTGTTAAGGCTATTTTGATTAATCCGACCGATGCAATGGCGGTGACTAACGCCATCCGCACCGCTAA
TCGGGCCAATATTCCAGTACTTACCTTAGACAGAACCGCAGAACGCGGCGACATTGCCAGCCATATCGCATCAGATAATA
TTGCCGGTGGTGAATTAGCTGGGCAGTTTATTGCCGACACCTTAGGCGCTAATGCCAAGGTGATTCAGCTTGAAGGCATT
GCGGGTACTTCTGCCGCTCGTGAGCGTGGTGAAGGTTTTAGCAATGCCGTTAAGGCTCATAGCTTAAATATGTTATCTAG
TCAGCCAGCGGATTTTGACCGCTCAAAAGGCTTAAACGTGATGGAAAATATGCTTGCCGCCAATGGCGATGTGCAGGCGG
TGTTTGCCCAAAATGATGAAATGGCCTTAGGTGCCCTACGCGCCATTGAAGCGGCGGGTAAAGAGGTGATGGTGATTGGT
TTTGATGGCACCGATGAAGGCATTGCTGCTGTAAGACGAAATCAGTTATCGGCAACCATTGCCCAGCAACCTGAACTACT
CGGCGCCACGGCTATTGTGATGGCCGACAAGATCTTAAAGGGCCAGCAGGTTGAAAAATCGATTCCTGTTGCGTTAAAAA
TCATTACTGCAACACAGTAA

Upstream 100 bases:

>100_bases
ATTTCTGATTAGCAGGGCGTTTGTCGTTCCTGCTTTTGTTCTGAAAGTTCTTATCATTTTAGAGCCTACTATCATAAAGG
CTGGATATTGAAAGGCGATT

Downstream 100 bases:

>100_bases
TTTTACTCATAATTTGTCACACTAGTGTGCTGCGCCTTTTGAACTTGATTCAAGGCGCGTTTTGCTCTGAGCCCAACATC
ATAATCGGTTGGCAGCGACT

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKQPINKKVSVMLAAALLSSSVSFGASAQDAIAIVLSTMNNPFFVTMKDGAEAKAKELGYKLIALDSQNDPSKELANVED
LTMRGVKAILINPTDAMAVTNAIRTANRANIPVLTLDRTAERGDIASHIASDNIAGGELAGQFIADTLGANAKVIQLEGI
AGTSAARERGEGFSNAVKAHSLNMLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGKEVMVIG
FDGTDEGIAAVRRNQLSATIAQQPELLGATAIVMADKILKGQQVEKSIPVALKIITATQ

Sequences:

>Translated_299_residues
MKQPINKKVSVMLAAALLSSSVSFGASAQDAIAIVLSTMNNPFFVTMKDGAEAKAKELGYKLIALDSQNDPSKELANVED
LTMRGVKAILINPTDAMAVTNAIRTANRANIPVLTLDRTAERGDIASHIASDNIAGGELAGQFIADTLGANAKVIQLEGI
AGTSAARERGEGFSNAVKAHSLNMLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGKEVMVIG
FDGTDEGIAAVRRNQLSATIAQQPELLGATAIVMADKILKGQQVEKSIPVALKIITATQ
>Mature_299_residues
MKQPINKKVSVMLAAALLSSSVSFGASAQDAIAIVLSTMNNPFFVTMKDGAEAKAKELGYKLIALDSQNDPSKELANVED
LTMRGVKAILINPTDAMAVTNAIRTANRANIPVLTLDRTAERGDIASHIASDNIAGGELAGQFIADTLGANAKVIQLEGI
AGTSAARERGEGFSNAVKAHSLNMLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGKEVMVIG
FDGTDEGIAAVRRNQLSATIAQQPELLGATAIVMADKILKGQQVEKSIPVALKIITATQ

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=290, Percent_Identity=62.4137931034483, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1790526, Length=297, Percent_Identity=34.006734006734, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=32.1739130434783, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1790194, Length=248, Percent_Identity=28.6290322580645, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788473, Length=283, Percent_Identity=27.5618374558304, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787948, Length=287, Percent_Identity=23.6933797909408, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 31259; Mature: 31259

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPINKKVSVMLAAALLSSSVSFGASAQDAIAIVLSTMNNPFFVTMKDGAEAKAKELGY
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCCCCEEEEECCCCCHHHHHCCE
KLIALDSQNDPSKELANVEDLTMRGVKAILINPTDAMAVTNAIRTANRANIPVLTLDRTA
EEEEEECCCCCHHHHCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCC
ERGDIASHIASDNIAGGELAGQFIADTLGANAKVIQLEGIAGTSAARERGEGFSNAVKAH
CCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHH
SLNMLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGKEVMVIG
HHHHHCCCCCCCCHHCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
FDGTDEGIAAVRRNQLSATIAQQPELLGATAIVMADKILKGQQVEKSIPVALKIITATQ
ECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECC
>Mature Secondary Structure
MKQPINKKVSVMLAAALLSSSVSFGASAQDAIAIVLSTMNNPFFVTMKDGAEAKAKELGY
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCCCCEEEEECCCCCHHHHHCCE
KLIALDSQNDPSKELANVEDLTMRGVKAILINPTDAMAVTNAIRTANRANIPVLTLDRTA
EEEEEECCCCCHHHHCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCC
ERGDIASHIASDNIAGGELAGQFIADTLGANAKVIQLEGIAGTSAARERGEGFSNAVKAH
CCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHH
SLNMLSSQPADFDRSKGLNVMENMLAANGDVQAVFAQNDEMALGALRAIEAAGKEVMVIG
HHHHHCCCCCCCCHHCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
FDGTDEGIAAVRRNQLSATIAQQPELLGATAIVMADKILKGQQVEKSIPVALKIITATQ
ECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]