| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622503
Identifier: 167622503
GI number: 167622503
Start: 676694
End: 677131
Strand: Direct
Name: 167622503
Synonym: Shal_0563
Alternate gene names: NA
Gene position: 676694-677131 (Clockwise)
Preceding gene: 167622502
Following gene: 167622504
Centisome position: 12.95
GC content: 45.43
Gene sequence:
>438_bases ATGAGAATCATTCAGGCAGTTAAAGAGTCATGGGGCTGGGTCGGGATTGACCCTATCGAGATCGTAGGACAAAACGATTT CGGAAATCTTATGATTGAGGATTCAAAGGGTCAGTACTGGCGGCTATGCCCAGAAGACGTCTACTGTGAACTTGTTGCCA AGAATAGAGAAGATCTTGATCGCTTATCCACAGATCAAGAGTTCTTGGAAGATTGGTACATGCAAGCGTTGGTAGAGCAA GCTAACCAACATCTTGGTCCGCTTAGCGAGGGAGATAAATATTGTCTCGTTACACCCAGTGTTCTCGGTGGCGAGTACGC TATCTCTAATATTAAAACGGCACCACTAATTGAGCTTGTACGTTTCTCTGGTGATTTGGCCAACCAAATCAAAGACCTCC CCGACGGCGCTCAAATTCAACTAAAGGTGGTAGATTGA
Upstream 100 bases:
>100_bases GTTAAATCAGGACAAAATACTGTTGCTGTTTTTCGTTCCTCAACAATTTTAGCCCATTAAATTTTGCCCATTAACGAGGG CGTTATGCGTAAAGGAAGTC
Downstream 100 bases:
>100_bases GCACGCATAACAAGTGCATGTTGTTCGCCCACTTCGTGGACTGTGACCTCCGCACTGCGTGCTCCAAATGCAGGCGTTAA GCGTAAGGAAACATATGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MRIIQAVKESWGWVGIDPIEIVGQNDFGNLMIEDSKGQYWRLCPEDVYCELVAKNREDLDRLSTDQEFLEDWYMQALVEQ ANQHLGPLSEGDKYCLVTPSVLGGEYAISNIKTAPLIELVRFSGDLANQIKDLPDGAQIQLKVVD
Sequences:
>Translated_145_residues MRIIQAVKESWGWVGIDPIEIVGQNDFGNLMIEDSKGQYWRLCPEDVYCELVAKNREDLDRLSTDQEFLEDWYMQALVEQ ANQHLGPLSEGDKYCLVTPSVLGGEYAISNIKTAPLIELVRFSGDLANQIKDLPDGAQIQLKVVD >Mature_145_residues MRIIQAVKESWGWVGIDPIEIVGQNDFGNLMIEDSKGQYWRLCPEDVYCELVAKNREDLDRLSTDQEFLEDWYMQALVEQ ANQHLGPLSEGDKYCLVTPSVLGGEYAISNIKTAPLIELVRFSGDLANQIKDLPDGAQIQLKVVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16388; Mature: 16388
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIIQAVKESWGWVGIDPIEIVGQNDFGNLMIEDSKGQYWRLCPEDVYCELVAKNREDLD CHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCEEEECCHHHHHHHHHCCHHHHH RLSTDQEFLEDWYMQALVEQANQHLGPLSEGDKYCLVTPSVLGGEYAISNIKTAPLIELV HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHCCCHHHCCCCHHHHHHHH RFSGDLANQIKDLPDGAQIQLKVVD HHCCHHHHHHHCCCCCCEEEEEEEC >Mature Secondary Structure MRIIQAVKESWGWVGIDPIEIVGQNDFGNLMIEDSKGQYWRLCPEDVYCELVAKNREDLD CHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCEEEECCHHHHHHHHHCCHHHHH RLSTDQEFLEDWYMQALVEQANQHLGPLSEGDKYCLVTPSVLGGEYAISNIKTAPLIELV HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHCCCHHHCCCCHHHHHHHH RFSGDLANQIKDLPDGAQIQLKVVD HHCCHHHHHHHCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA