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The map label for this gene is nodD1 [H]

Identifier: 167622470

GI number: 167622470

Start: 639635

End: 640567

Strand: Reverse

Name: nodD1 [H]

Synonym: Shal_0530

Alternate gene names: 167622470

Gene position: 640567-639635 (Counterclockwise)

Preceding gene: 167622471

Following gene: 167622469

Centisome position: 12.26

GC content: 47.27

Gene sequence:

>933_bases
ATGCTAACTCAGCTCAATCTTGAACGACTGAAAAATTGCGATTTAAACCTATTGCTGGCACTGGCCGTACTGCTCAACGA
GGCCCATGTTTCCAATGCTGCTAAGCAACTGGGTCTGTCTCAATCGGCAATGAGTCAGATGCTAAAACGCTTACGCCTAA
TGTTTGCCGATCCCCTGCTGCTCAAGAGCAATAACGGCATGACCTTAACCAACAAGGCTCAAGCTATCGCATTAGAGTTA
ACTCCTCTTCTGGATAAAACCGCCCGCATCTTAGAAGCCGAACACTTCACCCCCAAAACGGCCCAGGGTAGAATACGCTT
TATTATGAGTGATGTGACGGCCCAGCTAATTATCGCCCCATTAATCGAGCTGATGAGCGAAAAAGCCCCTGGAATTGAGC
TGGAATATATCTCGCAAAACGCCAATGGCTTTCAGTTACTCAGACGAGGACAAGTTGATGCGGTCATCGGCTTCTACGAC
AATGTGCCAAGCCCGATTGTCAGTGAGCCCATAGGTCTCGCTCCATGGCAAATGGTCACCCATAAAGTGACCAACAAGCA
AAATATCCATGCAGATAAAGATGCTATCAAACTCTTACGCTACCAATTTCAAGAGCATAACCAGCTGCATTCGATTGAAG
CGCTAGAACACCTAGATGCACTCGATGCGGCATACGCTTTGACAACGAACTCTTTAAGCACGCTGCTTTATGCGTTGCAA
ACCAATAATACCGTCACCCTACTGCCTCATTTCGCCATGGGGATCCTAGCAGAAGATGAGACTAAAAATTTTGACTGGCT
CGGCTCGCCAATCAATCTCGAGCTCAAAATTTGCTGGGATCGTCACCAAAGAGCGCCAGAGCTGCAGCAGTGGTTTAGAC
GTCAGTTGGTCACGCTTTTTCATAAACACTTTCCCTTAGAACAAGCCCTATGA

Upstream 100 bases:

>100_bases
GACGGCTTCATTCACTCCACATCAACTCACACCAACATGGCCTATTCAAGCTGAAATTTATCGTTTATAGTCAAGTTGAT
AATGGAAGATAGGTAACATA

Downstream 100 bases:

>100_bases
ATCCAACTGACTTAAAAATTATTCAACAGTGCGATCTCAACTTATTGCTAAGCCTAGCGATCCTGATTGAGGAGCAGAGT
GTATCTAAGAGTGCAGACAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLTQLNLERLKNCDLNLLLALAVLLNEAHVSNAAKQLGLSQSAMSQMLKRLRLMFADPLLLKSNNGMTLTNKAQAIALEL
TPLLDKTARILEAEHFTPKTAQGRIRFIMSDVTAQLIIAPLIELMSEKAPGIELEYISQNANGFQLLRRGQVDAVIGFYD
NVPSPIVSEPIGLAPWQMVTHKVTNKQNIHADKDAIKLLRYQFQEHNQLHSIEALEHLDALDAAYALTTNSLSTLLYALQ
TNNTVTLLPHFAMGILAEDETKNFDWLGSPINLELKICWDRHQRAPELQQWFRRQLVTLFHKHFPLEQAL

Sequences:

>Translated_310_residues
MLTQLNLERLKNCDLNLLLALAVLLNEAHVSNAAKQLGLSQSAMSQMLKRLRLMFADPLLLKSNNGMTLTNKAQAIALEL
TPLLDKTARILEAEHFTPKTAQGRIRFIMSDVTAQLIIAPLIELMSEKAPGIELEYISQNANGFQLLRRGQVDAVIGFYD
NVPSPIVSEPIGLAPWQMVTHKVTNKQNIHADKDAIKLLRYQFQEHNQLHSIEALEHLDALDAAYALTTNSLSTLLYALQ
TNNTVTLLPHFAMGILAEDETKNFDWLGSPINLELKICWDRHQRAPELQQWFRRQLVTLFHKHFPLEQAL
>Mature_310_residues
MLTQLNLERLKNCDLNLLLALAVLLNEAHVSNAAKQLGLSQSAMSQMLKRLRLMFADPLLLKSNNGMTLTNKAQAIALEL
TPLLDKTARILEAEHFTPKTAQGRIRFIMSDVTAQLIIAPLIELMSEKAPGIELEYISQNANGFQLLRRGQVDAVIGFYD
NVPSPIVSEPIGLAPWQMVTHKVTNKQNIHADKDAIKLLRYQFQEHNQLHSIEALEHLDALDAAYALTTNSLSTLLYALQ
TNNTVTLLPHFAMGILAEDETKNFDWLGSPINLELKICWDRHQRAPELQQWFRRQLVTLFHKHFPLEQAL

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=312, Percent_Identity=23.0769230769231, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35039; Mature: 35039

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTQLNLERLKNCDLNLLLALAVLLNEAHVSNAAKQLGLSQSAMSQMLKRLRLMFADPLL
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEE
LKSNNGMTLTNKAQAIALELTPLLDKTARILEAEHFTPKTAQGRIRFIMSDVTAQLIIAP
EECCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LIELMSEKAPGIELEYISQNANGFQLLRRGQVDAVIGFYDNVPSPIVSEPIGLAPWQMVT
HHHHHHCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCCCHHHHH
HKVTNKQNIHADKDAIKLLRYQFQEHNQLHSIEALEHLDALDAAYALTTNSLSTLLYALQ
HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TNNTVTLLPHFAMGILAEDETKNFDWLGSPINLELKICWDRHQRAPELQQWFRRQLVTLF
CCCEEEECCHHHHHHEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
HKHFPLEQAL
HHHCCHHHCC
>Mature Secondary Structure
MLTQLNLERLKNCDLNLLLALAVLLNEAHVSNAAKQLGLSQSAMSQMLKRLRLMFADPLL
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEE
LKSNNGMTLTNKAQAIALELTPLLDKTARILEAEHFTPKTAQGRIRFIMSDVTAQLIIAP
EECCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LIELMSEKAPGIELEYISQNANGFQLLRRGQVDAVIGFYDNVPSPIVSEPIGLAPWQMVT
HHHHHHCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCCCHHHHH
HKVTNKQNIHADKDAIKLLRYQFQEHNQLHSIEALEHLDALDAAYALTTNSLSTLLYALQ
HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TNNTVTLLPHFAMGILAEDETKNFDWLGSPINLELKICWDRHQRAPELQQWFRRQLVTLF
CCCEEEECCHHHHHHEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
HKHFPLEQAL
HHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8419293; 7934929 [H]