| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622452
Identifier: 167622452
GI number: 167622452
Start: 618555
End: 619193
Strand: Direct
Name: 167622452
Synonym: Shal_0512
Alternate gene names: NA
Gene position: 618555-619193 (Clockwise)
Preceding gene: 167622451
Following gene: 167622456
Centisome position: 11.83
GC content: 35.68
Gene sequence:
>639_bases ATGAGTCATGAACCTCATGAACTTTGTGAAGCACTTAAGCAAATTTCTACACCCAAAACAGCAAGTTCAATAGAGCTAAT TCATCAGATATGCACTGAGCAGTCTGAACGTGGGTCCTGTGATTTTACAATAGCGACGATTGGACGTTTAAGTGAAGCTG TTAATGGCCCGAAGACACAGGCCATCAGAAATAAAACAGGTGAAAAATACCGAGCACTTATTCAATCATGGGCAGAATAT AAAAAGCCCTTAAAAGTTATCACAAGCAAAGTAAAAGAACAAAATGCATGGGTTGATGATATTGACGATGCCCGTATCAA ATGGCTCGTAATGGATTTAATAGCACAAAATAGTAAGTTAACTGGGCAACTTCAATTAGCAAAAGAGCTATCAAATATTA ATATTGATCTAAGACCAGTAGCTAATAACAATGCAATGGAAAGTTCATCTCATCTATCTTTAACTAAGTCGAATCTACTC CCAACTGAAGTAGAAGCTATATCATACTCTATTGACCCTGATAGATTTGAAAAAAATGGCTGGATAGCAGATAAGCGTGG AAGAGTTAAAGATCGTAATGGTAATACAATATTCAAAGCGGGTTATGTCGATGCTATTGAAAAAATATTATCTTTATAA
Upstream 100 bases:
>100_bases ATGATAATCAGCTCATGCCGCTTCATGATGAAGTGAAGAAGATCTTACTCCAAAGCCAAGCGAATCAACTGAACATTAAC AAGCCTTTATTGGAGGCAGT
Downstream 100 bases:
>100_bases GGCATTGATCTGTAAGTGCCAAATTCTCACAACTGATTTAGTCCATGAAATTATTTATTTTCTTGGCATAAGTTAATCCA GTATTGTGGCCAACAAAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MSHEPHELCEALKQISTPKTASSIELIHQICTEQSERGSCDFTIATIGRLSEAVNGPKTQAIRNKTGEKYRALIQSWAEY KKPLKVITSKVKEQNAWVDDIDDARIKWLVMDLIAQNSKLTGQLQLAKELSNINIDLRPVANNNAMESSSHLSLTKSNLL PTEVEAISYSIDPDRFEKNGWIADKRGRVKDRNGNTIFKAGYVDAIEKILSL
Sequences:
>Translated_212_residues MSHEPHELCEALKQISTPKTASSIELIHQICTEQSERGSCDFTIATIGRLSEAVNGPKTQAIRNKTGEKYRALIQSWAEY KKPLKVITSKVKEQNAWVDDIDDARIKWLVMDLIAQNSKLTGQLQLAKELSNINIDLRPVANNNAMESSSHLSLTKSNLL PTEVEAISYSIDPDRFEKNGWIADKRGRVKDRNGNTIFKAGYVDAIEKILSL >Mature_211_residues SHEPHELCEALKQISTPKTASSIELIHQICTEQSERGSCDFTIATIGRLSEAVNGPKTQAIRNKTGEKYRALIQSWAEYK KPLKVITSKVKEQNAWVDDIDDARIKWLVMDLIAQNSKLTGQLQLAKELSNINIDLRPVANNNAMESSSHLSLTKSNLLP TEVEAISYSIDPDRFEKNGWIADKRGRVKDRNGNTIFKAGYVDAIEKILSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23764; Mature: 23633
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHEPHELCEALKQISTPKTASSIELIHQICTEQSERGSCDFTIATIGRLSEAVNGPKTQ CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHH AIRNKTGEKYRALIQSWAEYKKPLKVITSKVKEQNAWVDDIDDARIKWLVMDLIAQNSKL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC TGQLQLAKELSNINIDLRPVANNNAMESSSHLSLTKSNLLPTEVEAISYSIDPDRFEKNG HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEHHCCCCCHHHHHEEECCCHHHHCCCC WIADKRGRVKDRNGNTIFKAGYVDAIEKILSL CEECCCCCCCCCCCCEEEECHHHHHHHHHHCC >Mature Secondary Structure SHEPHELCEALKQISTPKTASSIELIHQICTEQSERGSCDFTIATIGRLSEAVNGPKTQ CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHH AIRNKTGEKYRALIQSWAEYKKPLKVITSKVKEQNAWVDDIDDARIKWLVMDLIAQNSKL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC TGQLQLAKELSNINIDLRPVANNNAMESSSHLSLTKSNLLPTEVEAISYSIDPDRFEKNG HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEHHCCCCCHHHHHEEECCCHHHHCCCC WIADKRGRVKDRNGNTIFKAGYVDAIEKILSL CEECCCCCCCCCCCCEEEECHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA