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The map label for this gene is slmA [H]

Identifier: 167622366

GI number: 167622366

Start: 502045

End: 502638

Strand: Reverse

Name: slmA [H]

Synonym: Shal_0426

Alternate gene names: 167622366

Gene position: 502638-502045 (Counterclockwise)

Preceding gene: 167622367

Following gene: 167622365

Centisome position: 9.62

GC content: 46.3

Gene sequence:

>594_bases
ATGGCTGCAAGCCCGAAGATAAACCGTCGAGAGCATATCCTCCAATGCTTAGCGACTATGCTAGAAACAAGCCCTGGACA
AAGGATCACCACCGCTAAATTAGCCGCAGAAGTTGGCGTATCAGAAGCAGCACTTTATCGCCACTTTCCAAGTAAAGCGC
GCATGTTTGAAGGACTGATTGAGTTCATCGAAGAGTCACTTCTCTCACGCATCAACCTGATCATGGATGAAGAAAAAGAC
ACCATGAAACGTTGTCAGCAACTGCTGCAGTTACTGCTGGTATTTGCCGAACGTAACCCGGGGATCTCGCGCGTATTAAA
CGGTGATGCACTACTGGGTGAAAACGAGCGTCTGCGTAGCCGAATTAGCCAGTTATTTGCAAAAATAGAAACCCATTTAA
AGCAAATTTTGCGTGAGAAAAGTTTACGTGAAGGCAAAGGCTTTAACCTCGATGAGGCGGTGCTTGCTAACTTACTGCTT
GCCGTTGCCGAAGGCCGAATCGCACAATTTGTGCGTAGCGAGTTTAAACTCAAGCCGACAAAGCACTTTAATGAGCAGTG
GACATTTATTCAGCAACAACTGCTTCAAAGCTAA

Upstream 100 bases:

>100_bases
TCGATTTCAGCGAACTTAGCTTAAATCAATTTAAATGGATAGCATGGAGCAATGTTTCCTTGCCGTCTCGCTCAGTAGTA
ATCGAGTGAAGGACAGATAA

Downstream 100 bases:

>100_bases
TTATTCTATAAAAATGGCAGCAGACCATACATGCTGCCATTTCCTCCTACGACTATTGTTTCCCCCCGCCTTTTAGTTTA
CTTTCTCTGTAGAAAACACA

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MAASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDEEKD
TMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRSRISQLFAKIETHLKQILREKSLREGKGFNLDEAVLANLLL
AVAEGRIAQFVRSEFKLKPTKHFNEQWTFIQQQLLQS

Sequences:

>Translated_197_residues
MAASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDEEKD
TMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRSRISQLFAKIETHLKQILREKSLREGKGFNLDEAVLANLLL
AVAEGRIAQFVRSEFKLKPTKHFNEQWTFIQQQLLQS
>Mature_196_residues
AASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDEEKDT
MKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRSRISQLFAKIETHLKQILREKSLREGKGFNLDEAVLANLLLA
VAEGRIAQFVRSEFKLKPTKHFNEQWTFIQQQLLQS

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=192, Percent_Identity=60.9375, Blast_Score=229, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22530; Mature: 22398

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLI
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEESLLSRINLIMDEEKDTMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RISQLFAKIETHLKQILREKSLREGKGFNLDEAVLANLLLAVAEGRIAQFVRSEFKLKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KHFNEQWTFIQQQLLQS
HHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
AASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLI
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEESLLSRINLIMDEEKDTMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RISQLFAKIETHLKQILREKSLREGKGFNLDEAVLANLLLAVAEGRIAQFVRSEFKLKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KHFNEQWTFIQQQLLQS
HHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA