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The map label for this gene is atpD

Identifier: 167040973

GI number: 167040973

Start: 2405602

End: 2406231

Strand: Reverse

Name: atpD

Synonym: Teth514_2362

Alternate gene names: 167040973

Gene position: 2406231-2405602 (Counterclockwise)

Preceding gene: 167040974

Following gene: 167040972

Centisome position: 97.92

GC content: 43.17

Gene sequence:

>630_bases
ATGACAATGATACATGTAAATCCTACCCGAATGGAACTTACCAGCTTGAAAAAAAGGCTTGTGACCGCAAAGCGTGGCCA
CAAGCTTTTGAAAGACAAGCAGGATGAGCTTGTGAAGAAATTTTTGGACATGGTAAAACAGAATAGAGCTCTGCGGGAGG
AGGTTGAGGCTGAACTCATCGGTGCTTTTAAAAGTTTCACCATGGCAAGAAGCCAAATGTCCGCCAACGTTGTTGAAGAG
AGTCTCATGATTCCCTCTGCTAAGGTCAGTATAAACGTCAAAAAGGAGAACATCATGAGCGTCAACGTACCAAAGTTAGA
GATATTACAGGAGGAGAGTAAAAATCTCTACCCTTACGGTTTTGCGAACACGTCAGCGGAAATGGACGCAGCCATACGTA
CTTTGGCGACCATGCTTCCAAAGATGCTAAAATTGGCTGAGCTTGAAAAGGCTTGTCAACTCATGGCCGATGAGATTGAA
AAAACTCGCCGCAGGGTAAACGCCCTAGAATATGTCTTAATACCGCAGCTTGAAAATACTATAAAGTACATCACAATGAA
GTTGGACGAAAACGAACGTTCAAGCCGCACAAGACTTATGAAGATAAAGGAAATGGTGATGAAGGGATAA

Upstream 100 bases:

>100_bases
TGGCGATAGGGTGGGATCTATTGACGATATTGCCGAGAGCCGAGCTTAAAAGAGTAAGAGATGAATATATTGACAAATAT
CTTCCTGAAAAAGGAGAATA

Downstream 100 bases:

>100_bases
AGTGCATGTTTCTTTTGTTAAAAGTTAGGGTGGGTATTTTTTGAATGCCCGCCCTTTATTTTAATTTTTCATACTTTCCT
TGGTTTTCAAATTTTATAAT

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTMIHVNPTRMELTSLKKRLVTAKRGHKLLKDKQDELVKKFLDMVKQNRALREEVEAELIGAFKSFTMARSQMSANVVEE
SLMIPSAKVSINVKKENIMSVNVPKLEILQEESKNLYPYGFANTSAEMDAAIRTLATMLPKMLKLAELEKACQLMADEIE
KTRRRVNALEYVLIPQLENTIKYITMKLDENERSSRTRLMKIKEMVMKG

Sequences:

>Translated_209_residues
MTMIHVNPTRMELTSLKKRLVTAKRGHKLLKDKQDELVKKFLDMVKQNRALREEVEAELIGAFKSFTMARSQMSANVVEE
SLMIPSAKVSINVKKENIMSVNVPKLEILQEESKNLYPYGFANTSAEMDAAIRTLATMLPKMLKLAELEKACQLMADEIE
KTRRRVNALEYVLIPQLENTIKYITMKLDENERSSRTRLMKIKEMVMKG
>Mature_208_residues
TMIHVNPTRMELTSLKKRLVTAKRGHKLLKDKQDELVKKFLDMVKQNRALREEVEAELIGAFKSFTMARSQMSANVVEES
LMIPSAKVSINVKKENIMSVNVPKLEILQEESKNLYPYGFANTSAEMDAAIRTLATMLPKMLKLAELEKACQLMADEIEK
TRRRVNALEYVLIPQLENTIKYITMKLDENERSSRTRLMKIKEMVMKG

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

Organism=Homo sapiens, GI7706757, Length=206, Percent_Identity=32.5242718446602, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17553636, Length=206, Percent_Identity=33.0097087378641, Blast_Score=100, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6320784, Length=204, Percent_Identity=30.3921568627451, Blast_Score=88, Evalue=8e-19,
Organism=Drosophila melanogaster, GI21355551, Length=204, Percent_Identity=28.921568627451, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI20128937, Length=204, Percent_Identity=29.4117647058824, Blast_Score=88, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_THEP3 (B0K8E6)

Other databases:

- EMBL:   CP000924
- RefSeq:   YP_001666214.1
- GeneID:   5873782
- GenomeReviews:   CP000924_GR
- KEGG:   tpd:Teth39_2257
- HOGENOM:   HBG732046
- OMA:   GEVMKEA
- ProtClustDB:   PRK00373
- BioCyc:   TPSE340099:TETH39_2257-MONOMER
- HAMAP:   MF_00271
- InterPro:   IPR002699
- PANTHER:   PTHR11671
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: 3.6.3.14

Molecular weight: Translated: 24066; Mature: 23935

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMIHVNPTRMELTSLKKRLVTAKRGHKLLKDKQDELVKKFLDMVKQNRALREEVEAELI
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAFKSFTMARSQMSANVVEESLMIPSAKVSINVKKENIMSVNVPKLEILQEESKNLYPYG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCCHHHHHHHHCCCCCCCC
FANTSAEMDAAIRTLATMLPKMLKLAELEKACQLMADEIEKTRRRVNALEYVLIPQLENT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKYITMKLDENERSSRTRLMKIKEMVMKG
HHHEEEEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TMIHVNPTRMELTSLKKRLVTAKRGHKLLKDKQDELVKKFLDMVKQNRALREEVEAELI
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAFKSFTMARSQMSANVVEESLMIPSAKVSINVKKENIMSVNVPKLEILQEESKNLYPYG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCCHHHHHHHHCCCCCCCC
FANTSAEMDAAIRTLATMLPKMLKLAELEKACQLMADEIEKTRRRVNALEYVLIPQLENT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKYITMKLDENERSSRTRLMKIKEMVMKG
HHHEEEEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA