Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 167040822

GI number: 167040822

Start: 2200092

End: 2200901

Strand: Reverse

Name: araQ [H]

Synonym: Teth514_2199

Alternate gene names: 167040822

Gene position: 2200901-2200092 (Counterclockwise)

Preceding gene: 167040823

Following gene: 167040821

Centisome position: 89.57

GC content: 34.2

Gene sequence:

>810_bases
ATGAAAAAGGTGTTGCGGTTTTTATTTTATACCGTTGTTGTAGGATATGCAGTAATTACACTTGGCCCTTTTATTTGGTC
TATAATAACATCTCTAAAACCCACCAGTGAATTAAATACTTTTGTTGTAAATATAAAGCATTTAACTTTAGATAACTATA
AAATGATAATCACAAAATTTCCCTTTTTGAGATGGTTTATAAATAGTGCTATAGTTGCAGCTATAGTGACGTTTGGAAAT
ATGCTGTTTAATTCTATGGCAGGGTATGCACTTGCAAGAATAAATTTTCCTGGAAGAAATTTATTGTTTATGGTTGTGCT
TGCTCTCATGATGGTGCCAGGACAGGTAGTGATGGTGCCGACTTATATCCTTCTCAGCAAATTAGGCTGGGTAAACACTT
ACATGGGTCTTACAATTCCGTTTTTGACCAGCAATTTTGGAATATTTTTAATGAGGCAATTTTTCTTATCTCTTCCCAAA
GAGTTAGAAGAAGCAGCTACAATTGACGGTTTGTCACGATTTGGGATTTTCTTTAAAATAGTTTTGCCTTTGTCTAAACC
TGCTCTTGCAACTCAATTCATTTTTATGTTTACTGGCAATTGGAATAGTTTCTTGTGGCCTAGCCTCTTGACGTCTAGTG
ATGATATGTATACACTGCCGGTAGGACTTAATTCCTTTTACGGGCAGTATTATCAATTTTGGAACCAGGTAATGGCAGGA
GCTATACTTTTGACATTACCGACTATATTAATATTCTTAATATTCCAGAGATATTTTGTAAAAGGAATATCTACAACGGG
ATTAAAATAA

Upstream 100 bases:

>100_bases
GCTTCAGCTATGGCTTTTGTATTATTTGTAATAATCTTGATATTGACTCTTATACAGCGAAAGCTTTTCAAAGAAGAAAC
CTATTAGGAGGTGGCAATAG

Downstream 100 bases:

>100_bases
ACGTAACGAAGGAGGAATAAAATGGCAAGATATTGTGGAGTGATTTTTGATTTAGATGGTGTTATTACAGATACTGCAAG
ATACCACTATTTGGCATGGA

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKKVLRFLFYTVVVGYAVITLGPFIWSIITSLKPTSELNTFVVNIKHLTLDNYKMIITKFPFLRWFINSAIVAAIVTFGN
MLFNSMAGYALARINFPGRNLLFMVVLALMMVPGQVVMVPTYILLSKLGWVNTYMGLTIPFLTSNFGIFLMRQFFLSLPK
ELEEAATIDGLSRFGIFFKIVLPLSKPALATQFIFMFTGNWNSFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAG
AILLTLPTILIFLIFQRYFVKGISTTGLK

Sequences:

>Translated_269_residues
MKKVLRFLFYTVVVGYAVITLGPFIWSIITSLKPTSELNTFVVNIKHLTLDNYKMIITKFPFLRWFINSAIVAAIVTFGN
MLFNSMAGYALARINFPGRNLLFMVVLALMMVPGQVVMVPTYILLSKLGWVNTYMGLTIPFLTSNFGIFLMRQFFLSLPK
ELEEAATIDGLSRFGIFFKIVLPLSKPALATQFIFMFTGNWNSFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAG
AILLTLPTILIFLIFQRYFVKGISTTGLK
>Mature_269_residues
MKKVLRFLFYTVVVGYAVITLGPFIWSIITSLKPTSELNTFVVNIKHLTLDNYKMIITKFPFLRWFINSAIVAAIVTFGN
MLFNSMAGYALARINFPGRNLLFMVVLALMMVPGQVVMVPTYILLSKLGWVNTYMGLTIPFLTSNFGIFLMRQFFLSLPK
ELEEAATIDGLSRFGIFFKIVLPLSKPALATQFIFMFTGNWNSFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAG
AILLTLPTILIFLIFQRYFVKGISTTGLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=205, Percent_Identity=38.0487804878049, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787571, Length=274, Percent_Identity=30.2919708029197, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=32.258064516129, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30626; Mature: 30626

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLRFLFYTVVVGYAVITLGPFIWSIITSLKPTSELNTFVVNIKHLTLDNYKMIITKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEEEECCHHHHHHHH
PFLRWFINSAIVAAIVTFGNMLFNSMAGYALARINFPGRNLLFMVVLALMMVPGQVVMVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH
TYILLSKLGWVNTYMGLTIPFLTSNFGIFLMRQFFLSLPKELEEAATIDGLSRFGIFFKI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
VLPLSKPALATQFIFMFTGNWNSFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAG
HHCCCCCHHHHHEEEEEECCCCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
AILLTLPTILIFLIFQRYFVKGISTTGLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKVLRFLFYTVVVGYAVITLGPFIWSIITSLKPTSELNTFVVNIKHLTLDNYKMIITKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEEEECCHHHHHHHH
PFLRWFINSAIVAAIVTFGNMLFNSMAGYALARINFPGRNLLFMVVLALMMVPGQVVMVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH
TYILLSKLGWVNTYMGLTIPFLTSNFGIFLMRQFFLSLPKELEEAATIDGLSRFGIFFKI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
VLPLSKPALATQFIFMFTGNWNSFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAG
HHCCCCCHHHHHEEEEEECCCCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
AILLTLPTILIFLIFQRYFVKGISTTGLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]