Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 167040819

GI number: 167040819

Start: 2197338

End: 2198195

Strand: Reverse

Name: ycjO [C]

Synonym: Teth514_2196

Alternate gene names: 167040819

Gene position: 2198195-2197338 (Counterclockwise)

Preceding gene: 167040820

Following gene: 167040818

Centisome position: 89.46

GC content: 35.43

Gene sequence:

>858_bases
ATGTCTTATGTAAACTTCGTAAAGAAATACAAACTTGAAATTGCCATGGTTTTACCATTACTATTATATATTTTGGGTTT
TACTGTATACCCTATCATTCAAACTATTACTTTAAGTTTTCAAGACCAGTATACTAAAGCATTTACATTGGCAAATTATA
AAGAGATTATAGGAAAAACAGAATTTAAAAATGCTTTTTTCAATACCATAGCTCTTACATTTATAAGCCTCACTTTGGAA
ATGACTGCAGGCCTCGTCATTGCGCTTATTTTAAAAAGGAATTTTAGAGGAAAAGGCCTTTTGAGGTCTTTGATGTTGGT
GCCAATGGGAGTACCTACTCTTGTGTCAGGTGTTGCGATGACCTATATTTTTGGGTTGTATGGTTATTTTAATGCGCTTT
TGCAAAAACTACACATTATTGAAATGCCTATAGATTGGGCAAGTGGTGGTTTTAAGACATTACTTATGGTTTCTGTAGCG
GATATGTGGAAAGTTACTCCGATGGTCATACTTTTGCTTTTGGCTGGTCTTGAAAGTATACCAGATGAAGTTTATGAAGC
TTCTAACATTGATGGGGCAACTACATGGCAGACTTTTAGGTATGTGACATTGCCACTTCTAAAGCCCTCTATAACGATGG
CCTTGATTTTAAGGGCGATAGACGCTTTTAGAATATTTGAACTTGTACTTGTTCTTGCAGGCCGTGCTACTCCTGTTATT
TCTACCTTTGCGTATGATGAGTATAATAATTATGCAAATGCCTATACATCTGCGGCAGCATCTACAATATTGCTCCTAAT
AATAGCAGTATTTATAGTGAGCTACTTAAAAATAGCTGGTACTAAGGAGGAAAGATGA

Upstream 100 bases:

>100_bases
AAGATTAAATTTTGTTTTATTTTTTAAATTGTAAGCGCTTACAGTTTTAAAGCATGAAAAGCGCAGTGAAGATTTTAAGC
TTACGAAAGGAGAATATGGC

Downstream 100 bases:

>100_bases
TGAGAAAAATAGATATTAGCGAAAAGATTTCAAATACAGCTTATATTCCAATAGCTATAATAGCGGCAATATTGATGGTT
ATACCAGTATATATACTTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSYVNFVKKYKLEIAMVLPLLLYILGFTVYPIIQTITLSFQDQYTKAFTLANYKEIIGKTEFKNAFFNTIALTFISLTLE
MTAGLVIALILKRNFRGKGLLRSLMLVPMGVPTLVSGVAMTYIFGLYGYFNALLQKLHIIEMPIDWASGGFKTLLMVSVA
DMWKVTPMVILLLLAGLESIPDEVYEASNIDGATTWQTFRYVTLPLLKPSITMALILRAIDAFRIFELVLVLAGRATPVI
STFAYDEYNNYANAYTSAAASTILLLIIAVFIVSYLKIAGTKEER

Sequences:

>Translated_285_residues
MSYVNFVKKYKLEIAMVLPLLLYILGFTVYPIIQTITLSFQDQYTKAFTLANYKEIIGKTEFKNAFFNTIALTFISLTLE
MTAGLVIALILKRNFRGKGLLRSLMLVPMGVPTLVSGVAMTYIFGLYGYFNALLQKLHIIEMPIDWASGGFKTLLMVSVA
DMWKVTPMVILLLLAGLESIPDEVYEASNIDGATTWQTFRYVTLPLLKPSITMALILRAIDAFRIFELVLVLAGRATPVI
STFAYDEYNNYANAYTSAAASTILLLIIAVFIVSYLKIAGTKEER
>Mature_284_residues
SYVNFVKKYKLEIAMVLPLLLYILGFTVYPIIQTITLSFQDQYTKAFTLANYKEIIGKTEFKNAFFNTIALTFISLTLEM
TAGLVIALILKRNFRGKGLLRSLMLVPMGVPTLVSGVAMTYIFGLYGYFNALLQKLHIIEMPIDWASGGFKTLLMVSVAD
MWKVTPMVILLLLAGLESIPDEVYEASNIDGATTWQTFRYVTLPLLKPSITMALILRAIDAFRIFELVLVLAGRATPVIS
TFAYDEYNNYANAYTSAAASTILLLIIAVFIVSYLKIAGTKEER

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=247, Percent_Identity=27.5303643724696, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788764, Length=219, Percent_Identity=29.2237442922374, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790465, Length=260, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789861, Length=284, Percent_Identity=26.056338028169, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI87082099, Length=229, Percent_Identity=25.3275109170306, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31875; Mature: 31743

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYVNFVKKYKLEIAMVLPLLLYILGFTVYPIIQTITLSFQDQYTKAFTLANYKEIIGKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFKNAFFNTIALTFISLTLEMTAGLVIALILKRNFRGKGLLRSLMLVPMGVPTLVSGVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH
TYIFGLYGYFNALLQKLHIIEMPIDWASGGFKTLLMVSVADMWKVTPMVILLLLAGLESI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDEVYEASNIDGATTWQTFRYVTLPLLKPSITMALILRAIDAFRIFELVLVLAGRATPVI
CHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
STFAYDEYNNYANAYTSAAASTILLLIIAVFIVSYLKIAGTKEER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SYVNFVKKYKLEIAMVLPLLLYILGFTVYPIIQTITLSFQDQYTKAFTLANYKEIIGKT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFKNAFFNTIALTFISLTLEMTAGLVIALILKRNFRGKGLLRSLMLVPMGVPTLVSGVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH
TYIFGLYGYFNALLQKLHIIEMPIDWASGGFKTLLMVSVADMWKVTPMVILLLLAGLESI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDEVYEASNIDGATTWQTFRYVTLPLLKPSITMALILRAIDAFRIFELVLVLAGRATPVI
CHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
STFAYDEYNNYANAYTSAAASTILLLIIAVFIVSYLKIAGTKEER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA