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The map label for this gene is radC [C]

Identifier: 167040758

GI number: 167040758

Start: 2140111

End: 2140821

Strand: Reverse

Name: radC [C]

Synonym: Teth514_2135

Alternate gene names: 167040758

Gene position: 2140821-2140111 (Counterclockwise)

Preceding gene: 167040759

Following gene: 167040757

Centisome position: 87.12

GC content: 35.58

Gene sequence:

>711_bases
GTGAAAGTATTGGGCAAGGATGCAAAAATCATGATAAAAGACTTGCCTTACGAAGAAAGACCCAGAGAAAGACTTATAAA
ACATGGGGCTCAAGTATTGTCAAATGTCGAGTTGATAGCTATAATAATAGGGACAGGAAGTAAAAGAGAAAGTGCCATTA
GTTTAGCACAAAGGCTTATAATGGAAGATAGAGGGCTTAAATTCATTGTAGATTCAAGTGTAGAAAAGCTTGCCAGCATA
AAAGGAATTGGTATAGCTAAGGCAGTAAAGCTAAAAGCTGCAGTAGAATTAGGACGTCGAATGATGTTATCTACGGGAAG
TGATAGTTTTACAATAACATCGCCAGAAGATGTCATAAATTTGATGATGGATGAAATGAGGTATTTGACGAAAGAGCATT
TTAAAGTGATAATGCTCAATGTAAAGAATAAAGTTATTGCGATAGAGACTATTTCTATAGGAAGTCTAAATACTTCCATT
GTGCATCCAAGAGAAGTATTTAAGGCTGCAATTGAAAGGTCATCTTCCTCTATAATTTTGGTTCACAATCACCCCAGTGG
AGACCCTACTCCTAGCAGAGAAGACATAGAAGTGACAAAAAGGTTGGTAGAAGGAGGAAATATACTGGGTATAAAAGTTT
TAGATCATGTTATAATTGGAGATGGGAGAGGTATAAGTCTTAAAGAAAAAGGGTATTATGAGTTTGAATAA

Upstream 100 bases:

>100_bases
GAAAAGATTGAAGGAGATTATTTTAATGTGGTAGGTCTTCCGATTTCAAAGCTTTTTGATATTTTAAAAAGAGAGTTTGA
TGTGAGGTTACTTTGAAAGG

Downstream 100 bases:

>100_bases
AATAGGAAGGAGTATACGCAAATGAGAGGATTTTCCAGAGATATTGGGATTGATTTAGGTACTGCTACAACTTTGGTATA
TGTACAAGGTAAAGGAATTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKVLGKDAKIMIKDLPYEERPRERLIKHGAQVLSNVELIAIIIGTGSKRESAISLAQRLIMEDRGLKFIVDSSVEKLASI
KGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVINLMMDEMRYLTKEHFKVIMLNVKNKVIAIETISIGSLNTSI
VHPREVFKAAIERSSSSIILVHNHPSGDPTPSREDIEVTKRLVEGGNILGIKVLDHVIIGDGRGISLKEKGYYEFE

Sequences:

>Translated_236_residues
MKVLGKDAKIMIKDLPYEERPRERLIKHGAQVLSNVELIAIIIGTGSKRESAISLAQRLIMEDRGLKFIVDSSVEKLASI
KGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVINLMMDEMRYLTKEHFKVIMLNVKNKVIAIETISIGSLNTSI
VHPREVFKAAIERSSSSIILVHNHPSGDPTPSREDIEVTKRLVEGGNILGIKVLDHVIIGDGRGISLKEKGYYEFE
>Mature_236_residues
MKVLGKDAKIMIKDLPYEERPRERLIKHGAQVLSNVELIAIIIGTGSKRESAISLAQRLIMEDRGLKFIVDSSVEKLASI
KGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVINLMMDEMRYLTKEHFKVIMLNVKNKVIAIETISIGSLNTSI
VHPREVFKAAIERSSSSIILVHNHPSGDPTPSREDIEVTKRLVEGGNILGIKVLDHVIIGDGRGISLKEKGYYEFE

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=33.9622641509434, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1788997, Length=141, Percent_Identity=39.0070921985816, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1788312, Length=120, Percent_Identity=40, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI2367100, Length=120, Percent_Identity=40.8333333333333, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26117; Mature: 26117

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLGKDAKIMIKDLPYEERPRERLIKHGAQVLSNVELIAIIIGTGSKRESAISLAQRLI
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHH
MEDRGLKFIVDSSVEKLASIKGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVIN
HHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEECHHHHHH
LMMDEMRYLTKEHFKVIMLNVKNKVIAIETISIGSLNTSIVHPREVFKAAIERSSSSIIL
HHHHHHHHHHHHCEEEEEEEECCCEEEEEEEEECCCCCCEECHHHHHHHHHHCCCCCEEE
VHNHPSGDPTPSREDIEVTKRLVEGGNILGIKVLDHVIIGDGRGISLKEKGYYEFE
EEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEECCCCCCCC
>Mature Secondary Structure
MKVLGKDAKIMIKDLPYEERPRERLIKHGAQVLSNVELIAIIIGTGSKRESAISLAQRLI
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHH
MEDRGLKFIVDSSVEKLASIKGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVIN
HHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEECHHHHHH
LMMDEMRYLTKEHFKVIMLNVKNKVIAIETISIGSLNTSIVHPREVFKAAIERSSSSIIL
HHHHHHHHHHHHCEEEEEEEECCCEEEEEEEEECCCCCCEECHHHHHHHHHHCCCCCEEE
VHNHPSGDPTPSREDIEVTKRLVEGGNILGIKVLDHVIIGDGRGISLKEKGYYEFE
EEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]