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The map label for this gene is ygeV [H]

Identifier: 167040593

GI number: 167040593

Start: 1977170

End: 1978750

Strand: Direct

Name: ygeV [H]

Synonym: Teth514_1966

Alternate gene names: 167040593

Gene position: 1977170-1978750 (Clockwise)

Preceding gene: 167040570

Following gene: 167040594

Centisome position: 80.46

GC content: 36.12

Gene sequence:

>1581_bases
ATGAGAAAAGCTTTTATTGATTCTTTTATTGATTCTCTTAAAGAAACTTTTGGCGTTGTGACCAATCTTCCGGAAAAATG
TTTCTCATTTATTTCACTTCCGAAAACAGGCTATCGTGTTTGGGCACCACCCTGTACGCCCACTTGCCCGGAAGGCACTG
CTTGCCCTTATGAGCTAATACTTTCCTTTAAACTAGAAGAAGATATTTTTGTGGTTGCATTGCCTAAAAACATTGATAGA
GATTTAAAGCTAACACCCGCATTCCTTGTTAAATTTCTTTTGACTGTATTGGAAATGTTATATATTCCTGAACAAAAATC
CGATAATTTGTTAATCGCGGAAGCATTGCAATTTTTGGCAAATCAATTTAATATAGAGTTTTTCCTTTTTGACAATAAAG
GACAACTAATTTTAAGTCAAACTCATTCGCCTATCCAACTTTCTACCTTTACCCTTTGGGAAAAGGTAAGTCAGACAGGT
GAGCCAGAAGGTTTTATAAAAACCACATGGGGAAACTTTTATTATCGTATTTTTACAAAAGATGGAATAACAACGGGTTC
GATAGTCTGGAAAACAGAACCAACCAAGCAGGAAGAAAACAAATTCCTTTTTCACGACGATTCTTTTTTTACTATTCCAG
GTAAAAACCCTCGTTTTTTAGAAATAAAAGACCTTGTACGACAAATCGCAGTAACCGACAGCACAGTACTACTTCAAGGT
GAAAGTGGCACTGGTAAAGAACTCTTTGCCCGCTATATTCACTACTTAAGTCCTCGGAAAAACCATCCTTTTATTGCAAT
AAACTGTGCTGCAATTCCCGATAACCTTCTTGAAAGCGAACTTTTCGGCTACGAAGACGGCTCATTTACAGGTGCTCGTC
GTGGCGGCAAGCCTGGTAAATTTGAACTTGCTAATGGTGGAACAATTTTTCTTGATGAAATTGGTGACATGCCTCTACAA
TTACAAGCAAAACTTTTACGGGTTTTGGAGAACCGACAAGTAGAAAGAATTGGAGCTACTGTTTCCCGTCCAATTGATGT
AAGAATTATTGCGGCAACTAATAAAGATTTAAAAGAATTAATTGATGCTAAACTGTTCAGAGAAGACCTATTCTTCCGCT
TAAATGTTTTTCCAGTTTTCATACCACCACTACGTGAGCGTCGAGATGATATACTTCTCCTTTTAGACTTTTATTTAAAA
AATATTTGTCTTGAACAGGATAAGCCATTTAAAATTTTCAGCCCAGAAGCTATTGAAATTCTTCAGAATTATGACTGGCC
AGGAAATATACGAGAATTAAAAAATGTAGTAACTTACGCCGTCTCTATTTGTAAAGGTGATATAATTACTCTGCATTATC
TACCAAAGTACTTACAAAACGGTTTATCATCCACTAAATCCCAGTTTGGTGAAGTTAAAACTACTCATCCAATTATCCAG
GTCGATCAATTAAAAGATCAATTAGAAATTCTATTAGCTAAATACGGTAATTCTACCCAGTCCAAAAAGTTAATTGCCCA
AGAGTTAGGTATTAGTCTGGCAACTCTCTATCGTTGGCTTAGAAAATACCATCTAAGGTAG

Upstream 100 bases:

>100_bases
TATTTTATTTTATTTTCTCATTTATTCTCAAAATTTCTCATTTTTTATCATGTTTTCTCATGGCTATTAAAATTTTTCAT
TTTAAGTGGTGATAAAATTT

Downstream 100 bases:

>100_bases
GTGTAACTATGCAAGAAATTACCATTGATTGGATTGAACCACTTTGGTATGGCAGTATCTTCCTCGGTTCGGGTGGTGGC
GGGAAAAGTGAACTTTTGGC

Product: sigma-54 factor interaction domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MRKAFIDSFIDSLKETFGVVTNLPEKCFSFISLPKTGYRVWAPPCTPTCPEGTACPYELILSFKLEEDIFVVALPKNIDR
DLKLTPAFLVKFLLTVLEMLYIPEQKSDNLLIAEALQFLANQFNIEFFLFDNKGQLILSQTHSPIQLSTFTLWEKVSQTG
EPEGFIKTTWGNFYYRIFTKDGITTGSIVWKTEPTKQEENKFLFHDDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQG
ESGTGKELFARYIHYLSPRKNHPFIAINCAAIPDNLLESELFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQ
LQAKLLRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLRERRDDILLLLDFYLK
NICLEQDKPFKIFSPEAIEILQNYDWPGNIRELKNVVTYAVSICKGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQ
VDQLKDQLEILLAKYGNSTQSKKLIAQELGISLATLYRWLRKYHLR

Sequences:

>Translated_526_residues
MRKAFIDSFIDSLKETFGVVTNLPEKCFSFISLPKTGYRVWAPPCTPTCPEGTACPYELILSFKLEEDIFVVALPKNIDR
DLKLTPAFLVKFLLTVLEMLYIPEQKSDNLLIAEALQFLANQFNIEFFLFDNKGQLILSQTHSPIQLSTFTLWEKVSQTG
EPEGFIKTTWGNFYYRIFTKDGITTGSIVWKTEPTKQEENKFLFHDDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQG
ESGTGKELFARYIHYLSPRKNHPFIAINCAAIPDNLLESELFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQ
LQAKLLRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLRERRDDILLLLDFYLK
NICLEQDKPFKIFSPEAIEILQNYDWPGNIRELKNVVTYAVSICKGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQ
VDQLKDQLEILLAKYGNSTQSKKLIAQELGISLATLYRWLRKYHLR
>Mature_526_residues
MRKAFIDSFIDSLKETFGVVTNLPEKCFSFISLPKTGYRVWAPPCTPTCPEGTACPYELILSFKLEEDIFVVALPKNIDR
DLKLTPAFLVKFLLTVLEMLYIPEQKSDNLLIAEALQFLANQFNIEFFLFDNKGQLILSQTHSPIQLSTFTLWEKVSQTG
EPEGFIKTTWGNFYYRIFTKDGITTGSIVWKTEPTKQEENKFLFHDDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQG
ESGTGKELFARYIHYLSPRKNHPFIAINCAAIPDNLLESELFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQ
LQAKLLRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLRERRDDILLLLDFYLK
NICLEQDKPFKIFSPEAIEILQNYDWPGNIRELKNVVTYAVSICKGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQ
VDQLKDQLEILLAKYGNSTQSKKLIAQELGISLATLYRWLRKYHLR

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=311, Percent_Identity=47.9099678456592, Blast_Score=285, Evalue=4e-78,
Organism=Escherichia coli, GI87082117, Length=234, Percent_Identity=51.7094017094017, Blast_Score=262, Evalue=4e-71,
Organism=Escherichia coli, GI1788550, Length=317, Percent_Identity=45.7413249211356, Blast_Score=258, Evalue=8e-70,
Organism=Escherichia coli, GI1790437, Length=315, Percent_Identity=41.5873015873016, Blast_Score=255, Evalue=4e-69,
Organism=Escherichia coli, GI1789087, Length=246, Percent_Identity=47.9674796747967, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1786524, Length=236, Percent_Identity=47.4576271186441, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI1788905, Length=316, Percent_Identity=41.1392405063291, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI87082152, Length=233, Percent_Identity=46.7811158798283, Blast_Score=225, Evalue=4e-60,
Organism=Escherichia coli, GI1790299, Length=259, Percent_Identity=44.7876447876448, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI87081872, Length=323, Percent_Identity=39.6284829721362, Blast_Score=222, Evalue=5e-59,
Organism=Escherichia coli, GI1787583, Length=352, Percent_Identity=33.5227272727273, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI87081858, Length=316, Percent_Identity=30.6962025316456, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1789828, Length=256, Percent_Identity=32.8125, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 60265; Mature: 60265

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKAFIDSFIDSLKETFGVVTNLPEKCFSFISLPKTGYRVWAPPCTPTCPEGTACPYELI
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHH
LSFKLEEDIFVVALPKNIDRDLKLTPAFLVKFLLTVLEMLYIPEQKSDNLLIAEALQFLA
EEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHH
NQFNIEFFLFDNKGQLILSQTHSPIQLSTFTLWEKVSQTGEPEGFIKTTWGNFYYRIFTK
HHCCEEEEEECCCCCEEEECCCCCEEEHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEC
DGITTGSIVWKTEPTKQEENKFLFHDDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQG
CCCCCCEEEECCCCCCCCCCEEEEECCCEEECCCCCCCEEEHHHHHHHHHCCCCEEEEEC
ESGTGKELFARYIHYLSPRKNHPFIAINCAAIPDNLLESELFGYEDGSFTGARRGGKPGK
CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCE
FELANGGTIFLDEIGDMPLQLQAKLLRVLENRQVERIGATVSRPIDVRIIAATNKDLKEL
EEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHCCHHCCCCEEEEEEECCHHHHHH
IDAKLFREDLFFRLNVFPVFIPPLRERRDDILLLLDFYLKNICLEQDKPFKIFSPEAIEI
HHHHHHHHHHEEEEEEEEEECCCHHCCCCCEEEHHHHHHHHHHCCCCCCCEEECCHHHHH
LQNYDWPGNIRELKNVVTYAVSICKGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQ
HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
VDQLKDQLEILLAKYGNSTQSKKLIAQELGISLATLYRWLRKYHLR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKAFIDSFIDSLKETFGVVTNLPEKCFSFISLPKTGYRVWAPPCTPTCPEGTACPYELI
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHH
LSFKLEEDIFVVALPKNIDRDLKLTPAFLVKFLLTVLEMLYIPEQKSDNLLIAEALQFLA
EEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHH
NQFNIEFFLFDNKGQLILSQTHSPIQLSTFTLWEKVSQTGEPEGFIKTTWGNFYYRIFTK
HHCCEEEEEECCCCCEEEECCCCCEEEHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEC
DGITTGSIVWKTEPTKQEENKFLFHDDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQG
CCCCCCEEEECCCCCCCCCCEEEEECCCEEECCCCCCCEEEHHHHHHHHHCCCCEEEEEC
ESGTGKELFARYIHYLSPRKNHPFIAINCAAIPDNLLESELFGYEDGSFTGARRGGKPGK
CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCE
FELANGGTIFLDEIGDMPLQLQAKLLRVLENRQVERIGATVSRPIDVRIIAATNKDLKEL
EEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHCCHHCCCCEEEEEEECCHHHHHH
IDAKLFREDLFFRLNVFPVFIPPLRERRDDILLLLDFYLKNICLEQDKPFKIFSPEAIEI
HHHHHHHHHHEEEEEEEEEECCCHHCCCCCEEEHHHHHHHHHHCCCCCCCEEECCHHHHH
LQNYDWPGNIRELKNVVTYAVSICKGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQ
HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
VDQLKDQLEILLAKYGNSTQSKKLIAQELGISLATLYRWLRKYHLR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]