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The map label for this gene is ymfC [H]

Identifier: 167040514

GI number: 167040514

Start: 1897711

End: 1898451

Strand: Reverse

Name: ymfC [H]

Synonym: Teth514_1883

Alternate gene names: 167040514

Gene position: 1898451-1897711 (Counterclockwise)

Preceding gene: 167040515

Following gene: 167040513

Centisome position: 77.26

GC content: 29.15

Gene sequence:

>741_bases
ATGACAGAGTTTAGAAAAAGTAAGAAGTCTGTTTCTTTAAGCCAAGAAGTAAAGAAAAAAATATTGGAGTACATAGAAAA
AGAAAATTTACAACCAGATGATAAATTACCTTCGGAAAGTCAACTGACAAAAATGTTCAAGATTAGTAGATATACTATAA
GAGAGGCTTTGGCCCTTTTAGAACAGGAAAAGATAATATATAAAATTAAAGGTAAGGGTACTTTTGTAAACAAAAAGCCT
ATACAGATAAAGAGTGGATTAGAATATTTGGATAGCATAACAGAAATTATTAGAAAATTTGGATATGAGCCGGGAACAAA
ATGGGTTAGTATTGAGGAAACTATACCTACAAAAGATATGGTGAAAAAACTAAATCTTAAACCAAAGGAAAAGGTGATTA
CTTTTAAAAGAATTAGAACGGCTGATGGCAAACCTGCTGCTTTTTTAGTAGATACAGTTGCGAAAAAAATACTTGGTAAC
AAAAAACCTGATCAAATTAATTTTGAATCCCTGTTTGAATACATGGAAAAGGAGTTTGGAATAATTATTGAATATGCCAT
TTCAGAAATTATACCGACTTTCCCTACTGAAGAGATGATTCAATATTTAGGTGTAGATAAAAATTCCCTGTTTTTGTTGC
TTTATCAATTACATTATGACAAAGAAGGAAGGACTATATTTTATTCTTTAGATTATTTTGATCCAAAAATATTTAAATTT
AAAGTTATACGAAGTCGGTAA

Upstream 100 bases:

>100_bases
ATAGGAGAACCGGTAATTCTTTCTGAAGATGAGATGAAATTGATGTTAGAAAAATTTAAAACTTATGGACAAGTTAAAAA
ATAATTTTAGGAAGGATAGT

Downstream 100 bases:

>100_bases
ATTAAGTTGGAAGAAGGGATAAGAATGAGGGGCTTGCATTTTGATAGCAAGTTAGAGCTGCGGACTGATTTGCAAAAGCC
TAAGGCCCAAAAAGGCGAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTEFRKSKKSVSLSQEVKKKILEYIEKENLQPDDKLPSESQLTKMFKISRYTIREALALLEQEKIIYKIKGKGTFVNKKP
IQIKSGLEYLDSITEIIRKFGYEPGTKWVSIEETIPTKDMVKKLNLKPKEKVITFKRIRTADGKPAAFLVDTVAKKILGN
KKPDQINFESLFEYMEKEFGIIIEYAISEIIPTFPTEEMIQYLGVDKNSLFLLLYQLHYDKEGRTIFYSLDYFDPKIFKF
KVIRSR

Sequences:

>Translated_246_residues
MTEFRKSKKSVSLSQEVKKKILEYIEKENLQPDDKLPSESQLTKMFKISRYTIREALALLEQEKIIYKIKGKGTFVNKKP
IQIKSGLEYLDSITEIIRKFGYEPGTKWVSIEETIPTKDMVKKLNLKPKEKVITFKRIRTADGKPAAFLVDTVAKKILGN
KKPDQINFESLFEYMEKEFGIIIEYAISEIIPTFPTEEMIQYLGVDKNSLFLLLYQLHYDKEGRTIFYSLDYFDPKIFKF
KVIRSR
>Mature_245_residues
TEFRKSKKSVSLSQEVKKKILEYIEKENLQPDDKLPSESQLTKMFKISRYTIREALALLEQEKIIYKIKGKGTFVNKKPI
QIKSGLEYLDSITEIIRKFGYEPGTKWVSIEETIPTKDMVKKLNLKPKEKVITFKRIRTADGKPAAFLVDTVAKKILGNK
KPDQINFESLFEYMEKEFGIIIEYAISEIIPTFPTEEMIQYLGVDKNSLFLLLYQLHYDKEGRTIFYSLDYFDPKIFKFK
VIRSR

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=235, Percent_Identity=30.6382978723404, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790118, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788418, Length=211, Percent_Identity=23.2227488151659, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28893; Mature: 28762

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEFRKSKKSVSLSQEVKKKILEYIEKENLQPDDKLPSESQLTKMFKISRYTIREALALL
CCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EQEKIIYKIKGKGTFVNKKPIQIKSGLEYLDSITEIIRKFGYEPGTKWVSIEETIPTKDM
HHCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
VKKLNLKPKEKVITFKRIRTADGKPAAFLVDTVAKKILGNKKPDQINFESLFEYMEKEFG
HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
IIIEYAISEIIPTFPTEEMIQYLGVDKNSLFLLLYQLHYDKEGRTIFYSLDYFDPKIFKF
CHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHEECCCCCEEEEEECCCCCCEEEE
KVIRSR
EEECCC
>Mature Secondary Structure 
TEFRKSKKSVSLSQEVKKKILEYIEKENLQPDDKLPSESQLTKMFKISRYTIREALALL
CCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EQEKIIYKIKGKGTFVNKKPIQIKSGLEYLDSITEIIRKFGYEPGTKWVSIEETIPTKDM
HHCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
VKKLNLKPKEKVITFKRIRTADGKPAAFLVDTVAKKILGNKKPDQINFESLFEYMEKEFG
HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
IIIEYAISEIIPTFPTEEMIQYLGVDKNSLFLLLYQLHYDKEGRTIFYSLDYFDPKIFKF
CHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHEECCCCCEEEEEECCCCCCEEEE
KVIRSR
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]