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The map label for this gene is sigM [H]

Identifier: 167040478

GI number: 167040478

Start: 1865196

End: 1865660

Strand: Direct

Name: sigM [H]

Synonym: Teth514_1847

Alternate gene names: 167040478

Gene position: 1865196-1865660 (Clockwise)

Preceding gene: 167040473

Following gene: 167040479

Centisome position: 75.91

GC content: 32.69

Gene sequence:

>465_bases
ATGTGGCAGGATTTGTACAAAGCTGCATTCTATTATTTACTTAAATTGGGTGTACCACAGGCTGATGCTGAAGACATAGC
CCAAGAAGCTCTGCTTTCCACATACTTGAATTTAGACGGCATTCAAGAGGGAAAATTAAAAGCTTATGTTTTGACTGCGG
CGCGAAACAAATACACTGATTATCTGCGCAAAACCAAAAAAGATATGACAGTTTCTATTATAGATGTCTTTCCTCAAAGT
ACCTTTTCAGAGTTTCAACAGATTGAAAATAAAGAAGTAATAAAAAAAGCAGTTAATAGGCTTACTCTCAATGAGCAAAA
GCTCTTTTACCTTAAATTCATATTAGAAATGTCAAATGAAGAAATTTCCTCTTACTTAAAAACCAATTCCAATACAGTAA
AGACAATGGTATGGAGACTAAGAAAAAAATTAAAAGAATATTTAAAAGAGGAGGAGAAAAGTTAA

Upstream 100 bases:

>100_bases
ATAATCGAAATAACAATGAACTTTTGCATATTTTTAATTTGTTTACTTTTTCATCCCCAAAACGTCTTTATTAATGAAAA
GCTATAAGGAGGAGGGGTTA

Downstream 100 bases:

>100_bases
ATGGGATCAGATTTAAATAAGCCAATAAGCGATATATCTTTTGACGAAAAAGCTTTTTTGCGCAAAGCTCGTTTTAAAAG
CATACTTCGCATAATAATAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTDYLRKTKKDMTVSIIDVFPQS
TFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS

Sequences:

>Translated_154_residues
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTDYLRKTKKDMTVSIIDVFPQS
TFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
>Mature_154_residues
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTDYLRKTKKDMTVSIIDVFPQS
TFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18158; Mature: 18158

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTD
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
YLRKTKKDMTVSIIDVFPQSTFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLNLDGIQEGKLKAYVLTAARNKYTD
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
YLRKTKKDMTVSIIDVFPQSTFSEFQQIENKEVIKKAVNRLTLNEQKLFYLKFILEMSNE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]