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The map label for this gene is sigI [H]

Identifier: 167040438

GI number: 167040438

Start: 1813609

End: 1813953

Strand: Direct

Name: sigI [H]

Synonym: Teth514_1805

Alternate gene names: 167040438

Gene position: 1813609-1813953 (Clockwise)

Preceding gene: 167040434

Following gene: 167040439

Centisome position: 73.81

GC content: 28.12

Gene sequence:

>345_bases
ATGTCAGGGGTGGAATTATTTAAAGATAGAGATGAATTTATTACAAAAAATAAAGGTTTTATATACAATGTTGCCAGTTC
TGTATGTGGCAAAAAGCTTGACTGGCATAATGATGATGAATTAAGCATTGCAATGATTGCTTTCAACAAAGCGATTGATA
CTTACACTAAAGAAAAAGGAAATTTTTACAATTATGCTAGAGTTTTAATTAAAAATGCACTTATAGACTACTTTAGAAAA
AATAAAAACATGCCATATCTTATTTTTGAACTGGATAAACAAAACGGCAAGAAGAACTATGCCGAAAATGAAATTGAACT
TATACAAGAAAACTTAATTTTGTAG

Upstream 100 bases:

>100_bases
GTATTTTTCTTTTATATTTATATACGATAACTTAAATAGAATTTCAGGGGGTAACCTGCAAAAAAATAATTTTTTTTCGT
AAATAATTACGAAAGGAGAA

Downstream 100 bases:

>100_bases
CAGTCTATAATACGGTAGTTGCTTCTGTAATTGTGGATATCAACCCTTCTGTTCAACTTGATATTAACCGCTGGAATAGG
GTAATTTCTTACAAGCCTCT

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSGVELFKDRDEFITKNKGFIYNVASSVCGKKLDWHNDDELSIAMIAFNKAIDTYTKEKGNFYNYARVLIKNALIDYFRK
NKNMPYLIFELDKQNGKKNYAENEIELIQENLIL

Sequences:

>Translated_114_residues
MSGVELFKDRDEFITKNKGFIYNVASSVCGKKLDWHNDDELSIAMIAFNKAIDTYTKEKGNFYNYARVLIKNALIDYFRK
NKNMPYLIFELDKQNGKKNYAENEIELIQENLIL
>Mature_113_residues
SGVELFKDRDEFITKNKGFIYNVASSVCGKKLDWHNDDELSIAMIAFNKAIDTYTKEKGNFYNYARVLIKNALIDYFRKN
KNMPYLIFELDKQNGKKNYAENEIELIQENLIL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 13400; Mature: 13269

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVELFKDRDEFITKNKGFIYNVASSVCGKKLDWHNDDELSIAMIAFNKAIDTYTKEKG
CCCCHHHHCCHHHHHCCCCEEEECHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCC
NFYNYARVLIKNALIDYFRKNKNMPYLIFELDKQNGKKNYAENEIELIQENLIL
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SGVELFKDRDEFITKNKGFIYNVASSVCGKKLDWHNDDELSIAMIAFNKAIDTYTKEKG
CCCHHHHCCHHHHHCCCCEEEECHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCC
NFYNYARVLIKNALIDYFRKNKNMPYLIFELDKQNGKKNYAENEIELIQENLIL
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]