Click here to switch to the map view.

The map label for this gene is 167040405

Identifier: 167040405

GI number: 167040405

Start: 1771948

End: 1772496

Strand: Reverse

Name: 167040405

Synonym: Teth514_1768

Alternate gene names: NA

Gene position: 1772496-1771948 (Counterclockwise)

Preceding gene: 167040411

Following gene: 167040403

Centisome position: 72.13

GC content: 27.87

Gene sequence:

>549_bases
ATGAGAACGTTTATTGGAATTGATTTAGATGAAAAATCAATAGGGAAATTATCAAGTTTTCAGGAAGAGTTAAAAAATTA
TACGATAAAAGGAAGATGGACTCATAAAGATAATTTCCATATTACTTTAAAATTTCTAGGGGAAATAGAAACAGAAAGTG
TAATGAAAATAAAAGACTCTCTTGAAGTAGCAGTAAAAGATATTAGTCCCTTTTATATAAAATTTGACAAAGTAGGATTT
TTTAAGGGAAATGGCGATATGCGAGTATTGTGGGTAGGTACAGAAGAAAATTCCTTTCTTAATAAACTGCATGACAATAT
AGATGAGGAATTATATAAAATTGGCTTTGAAAAAGATAAAAGAAAGTTTACTTCCCACATTACCATTGCCAGAGACATAC
GTTTAAGCATTGACATAGAAGAAGTAAATAGTCTTTTTGAAAAACAAGAAAAAGGAGCAATTTTAGTAGATACAGTTTTT
TTGTATGAGAGTGTTATACAAGAAAATAGAAGAAAATATATTCCTATATTTAGTGTGCCTTTAAAATAA

Upstream 100 bases:

>100_bases
GAGATGGATTTTTTTTGCTTCTATTTGCTATAATTTTGAGGAGGACAATGAAAGTTTTAATACAATTATTTCCATGGAAA
TAGAAAAAAGGAGGAGTGCT

Downstream 100 bases:

>100_bases
GAAGTAAGATGCCTAAAAAGCATCTTACTCTGGGTCTACATAAAGGGTCTTTTGGCTTGTATATATTACAAAACCTGGTT
TTGCGCCAGAAGGTTTTTTT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MRTFIGIDLDEKSIGKLSSFQEELKNYTIKGRWTHKDNFHITLKFLGEIETESVMKIKDSLEVAVKDISPFYIKFDKVGF
FKGNGDMRVLWVGTEENSFLNKLHDNIDEELYKIGFEKDKRKFTSHITIARDIRLSIDIEEVNSLFEKQEKGAILVDTVF
LYESVIQENRRKYIPIFSVPLK

Sequences:

>Translated_182_residues
MRTFIGIDLDEKSIGKLSSFQEELKNYTIKGRWTHKDNFHITLKFLGEIETESVMKIKDSLEVAVKDISPFYIKFDKVGF
FKGNGDMRVLWVGTEENSFLNKLHDNIDEELYKIGFEKDKRKFTSHITIARDIRLSIDIEEVNSLFEKQEKGAILVDTVF
LYESVIQENRRKYIPIFSVPLK
>Mature_182_residues
MRTFIGIDLDEKSIGKLSSFQEELKNYTIKGRWTHKDNFHITLKFLGEIETESVMKIKDSLEVAVKDISPFYIKFDKVGF
FKGNGDMRVLWVGTEENSFLNKLHDNIDEELYKIGFEKDKRKFTSHITIARDIRLSIDIEEVNSLFEKQEKGAILVDTVF
LYESVIQENRRKYIPIFSVPLK

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21349; Mature: 21349

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFIGIDLDEKSIGKLSSFQEELKNYTIKGRWTHKDNFHITLKFLGEIETESVMKIKDS
CCEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHH
LEVAVKDISPFYIKFDKVGFFKGNGDMRVLWVGTEENSFLNKLHDNIDEELYKIGFEKDK
HHHHEECCCCEEEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHH
RKFTSHITIARDIRLSIDIEEVNSLFEKQEKGAILVDTVFLYESVIQENRRKYIPIFSVP
HHHHHHEEEEEEEEEEEEHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCEECCEEECC
LK
CC
>Mature Secondary Structure
MRTFIGIDLDEKSIGKLSSFQEELKNYTIKGRWTHKDNFHITLKFLGEIETESVMKIKDS
CCEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHH
LEVAVKDISPFYIKFDKVGFFKGNGDMRVLWVGTEENSFLNKLHDNIDEELYKIGFEKDK
HHHHEECCCCEEEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHH
RKFTSHITIARDIRLSIDIEEVNSLFEKQEKGAILVDTVFLYESVIQENRRKYIPIFSVP
HHHHHHEEEEEEEEEEEEHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCEECCEEECC
LK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]