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The map label for this gene is codY [H]

Identifier: 167040334

GI number: 167040334

Start: 1706804

End: 1707556

Strand: Reverse

Name: codY [H]

Synonym: Teth514_1697

Alternate gene names: 167040334

Gene position: 1707556-1706804 (Counterclockwise)

Preceding gene: 167040335

Following gene: 167040333

Centisome position: 69.49

GC content: 32.27

Gene sequence:

>753_bases
ATGAGCACACTATTAGAAAAAACTAGAAAAGTAAATCGGATTTTGCAAAAAACAGGAATTCAACCAGTTGATTTTAACGA
AATGGCTAGTATCCTAAAAGATGTCATTGAGGCCAACGTATATATTTTGAGTAGAAAGGGTAAAGTATTAGGTTACAGTA
TATTAAAGGATTATGGAAATGACATTTTTGCTCAAAGTAAAATAATACCTGAAGAATATAATGACAAACTTTTGCGAGTG
ACGGAGACGCTGGCTAATGATAAAGGTAATCTTTTTAAAGAGGATAAAATTTTATCAGATTTAATTTTGACTATAGTACC
TGTCAATGGCGGTGGGGACAGATTAGGAACTTTAGTCTTATCAAGAGGGGTAAAAGAATTTACTGATGATGACTTGATAT
TAGCGGAATACGGTGCTACAGTAGTTGGTCTTGAAATTTTAAGGTCGAAAAATGAAGAAATAGAAGATGAAGCGAGAAAA
AGAGCAGTTGTTCAAATGGCACTAGGAACACTTTCTTACTCCGAATTAGAAGCTATAAAAAATATTTTTGAAGAGCTAAA
TGGAAAAGAAGGATTATTAGTTGCAAGTAAAATAGCAGATAAAGTAGGTATTACAAGGTCTGTAATTGTAAATGCACTTA
GAAAGTTTGAAAGTGCTGGCATAATTGAGTCAAGGTCTTTAGGAATGAAAGGTACCCATATAAGGGTACTAAACGATAAA
TTATTAGAAGAGTTAGAGAAAATGAAAAGATAA

Upstream 100 bases:

>100_bases
CTGAAGAGTATGTAAAAGAGCAATTAAAGGATAGTCTCAATAAATACGAAGTTAATAAATACATTTTATGATAATAAAAA
AACATAGGAGGATTAAAAAT

Downstream 100 bases:

>100_bases
ACTTAAATCCTTATTAAAAAAGAAGAAGTCTCCGCTTTTATGCATGAGGTTGTACTTTAGCATGAAAGCAGGAGACTTAA
TTTTATGTAAAAGAGTCTTA

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSTLLEKTRKVNRILQKTGIQPVDFNEMASILKDVIEANVYILSRKGKVLGYSILKDYGNDIFAQSKIIPEEYNDKLLRV
TETLANDKGNLFKEDKILSDLILTIVPVNGGGDRLGTLVLSRGVKEFTDDDLILAEYGATVVGLEILRSKNEEIEDEARK
RAVVQMALGTLSYSELEAIKNIFEELNGKEGLLVASKIADKVGITRSVIVNALRKFESAGIIESRSLGMKGTHIRVLNDK
LLEELEKMKR

Sequences:

>Translated_250_residues
MSTLLEKTRKVNRILQKTGIQPVDFNEMASILKDVIEANVYILSRKGKVLGYSILKDYGNDIFAQSKIIPEEYNDKLLRV
TETLANDKGNLFKEDKILSDLILTIVPVNGGGDRLGTLVLSRGVKEFTDDDLILAEYGATVVGLEILRSKNEEIEDEARK
RAVVQMALGTLSYSELEAIKNIFEELNGKEGLLVASKIADKVGITRSVIVNALRKFESAGIIESRSLGMKGTHIRVLNDK
LLEELEKMKR
>Mature_249_residues
STLLEKTRKVNRILQKTGIQPVDFNEMASILKDVIEANVYILSRKGKVLGYSILKDYGNDIFAQSKIIPEEYNDKLLRVT
ETLANDKGNLFKEDKILSDLILTIVPVNGGGDRLGTLVLSRGVKEFTDDDLILAEYGATVVGLEILRSKNEEIEDEARKR
AVVQMALGTLSYSELEAIKNIFEELNGKEGLLVASKIADKVGITRSVIVNALRKFESAGIIESRSLGMKGTHIRVLNDKL
LEELEKMKR

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 27868; Mature: 27737

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLLEKTRKVNRILQKTGIQPVDFNEMASILKDVIEANVYILSRKGKVLGYSILKDYGN
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCC
DIFAQSKIIPEEYNDKLLRVTETLANDKGNLFKEDKILSDLILTIVPVNGGGDRLGTLVL
HHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
SRGVKEFTDDDLILAEYGATVVGLEILRSKNEEIEDEARKRAVVQMALGTLSYSELEAIK
HHCHHHHCCCCEEHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
NIFEELNGKEGLLVASKIADKVGITRSVIVNALRKFESAGIIESRSLGMKGTHIRVLNDK
HHHHHCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHH
LLEELEKMKR
HHHHHHHHCC
>Mature Secondary Structure 
STLLEKTRKVNRILQKTGIQPVDFNEMASILKDVIEANVYILSRKGKVLGYSILKDYGN
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCC
DIFAQSKIIPEEYNDKLLRVTETLANDKGNLFKEDKILSDLILTIVPVNGGGDRLGTLVL
HHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
SRGVKEFTDDDLILAEYGATVVGLEILRSKNEEIEDEARKRAVVQMALGTLSYSELEAIK
HHCHHHHCCCCEEHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
NIFEELNGKEGLLVASKIADKVGITRSVIVNALRKFESAGIIESRSLGMKGTHIRVLNDK
HHHHHCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHH
LLEELEKMKR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA