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The map label for this gene is whiG [H]

Identifier: 167040301

GI number: 167040301

Start: 1680393

End: 1681133

Strand: Reverse

Name: whiG [H]

Synonym: Teth514_1664

Alternate gene names: 167040301

Gene position: 1681133-1680393 (Counterclockwise)

Preceding gene: 167040302

Following gene: 167040300

Centisome position: 68.41

GC content: 29.01

Gene sequence:

>741_bases
ATGGCATTAGTGGAGGAGGATATATGGAAAACTTATAATTCTAATAAAGACCCAAATCTACGAAATGAAATAATAATCAA
GTATATGCCGCTTGTCAAACATATTGTCAAAAAACTCATCATTTCTGATATTACTCAATCTGAGTATGAAGACTTGATAA
ATCAAGGAGTAATTGGCCTTATCGATGCAATTGAAAAATATCAGCCTAGTAAAGGTGTAAAATTTGAAACTTACGCTACT
TTAAGAATAAGAGGAGAAATAATAGACTATTTGCGGAAAAAAGATTGGATGCCTCGAAGTCTCAAAAAAAAGTACAGAAA
AATAGAAGAAACCGTAGAAACACTTCAACAAAAATATAATAGGGAACCTACAGTTGAAGAAATAACAGAAGCTTGTGGCT
TAAATGAAACAGATGTTTTAAAAACTTTAAGCTATATCAATGTTTCTAACATTAACTCTTTAGAGGAAGCTATTGAAAAT
AACTTTAAATTACATGCTATTTCAGATGTCGAACTAAAAAACCCAGAAGAGGAAGTATTGTACAAAGAACTAAAAAGAAA
GCTAGCAAATGCTATTGAAAATTTACCAGATAAAGAAAGATTAGTAATAACCTTGTATTATTATGAAGATTTAAACTACA
AAGACATAAGCAAAATTTTAAATTTAACAGAGTCTAGAATATCACAAATTCATACAAAAGCTATCAAAAGGATAAGGGAG
ATATTAGGTGAATACTTTTAA

Upstream 100 bases:

>100_bases
TTATGGAAGAACTATTGAGTTTTATTCTGAGGATGGAAGACTATTAGTTAAAACTATTGGTTATGGAATAAAATATATTT
AAAAATTGGGGGAATTTTGT

Downstream 100 bases:

>100_bases
AATGGGGGCTTTAAAAATGGATGAAAAAAAGTATAAAGTACTTATTGACGTATCGAGAGATAAACAACAGGCCTATTTGA
CTTTAATTGAAGACCCCGAT

Product: RNA polymerase sigma-28 subunit FliA/WhiG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MALVEEDIWKTYNSNKDPNLRNEIIIKYMPLVKHIVKKLIISDITQSEYEDLINQGVIGLIDAIEKYQPSKGVKFETYAT
LRIRGEIIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYNREPTVEEITEACGLNETDVLKTLSYINVSNINSLEEAIEN
NFKLHAISDVELKNPEEEVLYKELKRKLANAIENLPDKERLVITLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIRE
ILGEYF

Sequences:

>Translated_246_residues
MALVEEDIWKTYNSNKDPNLRNEIIIKYMPLVKHIVKKLIISDITQSEYEDLINQGVIGLIDAIEKYQPSKGVKFETYAT
LRIRGEIIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYNREPTVEEITEACGLNETDVLKTLSYINVSNINSLEEAIEN
NFKLHAISDVELKNPEEEVLYKELKRKLANAIENLPDKERLVITLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIRE
ILGEYF
>Mature_245_residues
ALVEEDIWKTYNSNKDPNLRNEIIIKYMPLVKHIVKKLIISDITQSEYEDLINQGVIGLIDAIEKYQPSKGVKFETYATL
RIRGEIIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYNREPTVEEITEACGLNETDVLKTLSYINVSNINSLEEAIENN
FKLHAISDVELKNPEEEVLYKELKRKLANAIENLPDKERLVITLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIREI
LGEYF

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=220, Percent_Identity=38.6363636363636, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1789098, Length=202, Percent_Identity=29.7029702970297, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789448, Length=202, Percent_Identity=27.2277227722772, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 29034; Mature: 28903

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVEEDIWKTYNSNKDPNLRNEIIIKYMPLVKHIVKKLIISDITQSEYEDLINQGVIGL
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDAIEKYQPSKGVKFETYATLRIRGEIIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYN
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
REPTVEEITEACGLNETDVLKTLSYINVSNINSLEEAIENNFKLHAISDVELKNPEEEVL
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
YKELKRKLANAIENLPDKERLVITLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIRE
HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGEYF
HHHCCC
>Mature Secondary Structure 
ALVEEDIWKTYNSNKDPNLRNEIIIKYMPLVKHIVKKLIISDITQSEYEDLINQGVIGL
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDAIEKYQPSKGVKFETYATLRIRGEIIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYN
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
REPTVEEITEACGLNETDVLKTLSYINVSNINSLEEAIENNFKLHAISDVELKNPEEEVL
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
YKELKRKLANAIENLPDKERLVITLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIRE
HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGEYF
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]