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The map label for this gene is ymdB [C]

Identifier: 167040047

GI number: 167040047

Start: 1444964

End: 1445488

Strand: Direct

Name: ymdB [C]

Synonym: Teth514_1407

Alternate gene names: 167040047

Gene position: 1444964-1445488 (Clockwise)

Preceding gene: 167040046

Following gene: 167040049

Centisome position: 58.8

GC content: 36.38

Gene sequence:

>525_bases
ATGAAAGAAAAGATAAAATTAATAAAGGGGAATATTGTGGATCAAGAAGTAGATGCTATTGTAAATGCTGCAAATTCTTC
TTTATCTGGAGGTGGTGGAGTAGACGGAGCTATTCATAGAGCGGGTGGCCCTTCTATCGCTGAGGAGTGCAGAGTTATAA
GAGAAAAACAAGGGGGTTGTCCTACAGGTCATGCGGTTATAACTGGAGCAGGTAATTTAAAGGCTAAATATGTGATTCAC
GCTGTAGGACCTATTTGGAGAGGTGGCAATCATAATGAAGATAATTTATTAGCAAGTGCTTACATAGAAAGCCTCAAATT
GGCGGATGAATATAATGTAAAAACTATAGCTTTTCCTTCTATAAGCACAGGAGCTTATGGTTTTCCTATAGAAAGAGCGG
CAAAAATAGCTTTAAGAGTAGTATCTGATTATCTTGAAGGTAGCGATATAAAAGAAGTGAGATTTATACTTTTTAGTGAT
AAAGACTATGAAGTGTATTCAAAAGCTTATGAGGAACTGACTTAA

Upstream 100 bases:

>100_bases
ATAATTGGTGAAAAATATGAAAACACAATGTTGTGAAAATATAGCTTTTTTGTGGTATAATCTTAATTGAAAATAAAAAT
AAAAATTATAGGGTGATGAA

Downstream 100 bases:

>100_bases
AGAGAGATAGACCCTCAATACGGGCCTATCTCTCGATTTATTTTACTATTTTTTCTGCCACAAGTAATATCATCAATACA
CCTACAGCTAGTCTATAATA

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKEKIKLIKGNIVDQEVDAIVNAANSSLSGGGGVDGAIHRAGGPSIAEECRVIREKQGGCPTGHAVITGAGNLKAKYVIH
AVGPIWRGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSISTGAYGFPIERAAKIALRVVSDYLEGSDIKEVRFILFSD
KDYEVYSKAYEELT

Sequences:

>Translated_174_residues
MKEKIKLIKGNIVDQEVDAIVNAANSSLSGGGGVDGAIHRAGGPSIAEECRVIREKQGGCPTGHAVITGAGNLKAKYVIH
AVGPIWRGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSISTGAYGFPIERAAKIALRVVSDYLEGSDIKEVRFILFSD
KDYEVYSKAYEELT
>Mature_174_residues
MKEKIKLIKGNIVDQEVDAIVNAANSSLSGGGGVDGAIHRAGGPSIAEECRVIREKQGGCPTGHAVITGAGNLKAKYVIH
AVGPIWRGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSISTGAYGFPIERAAKIALRVVSDYLEGSDIKEVRFILFSD
KDYEVYSKAYEELT

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=178, Percent_Identity=51.123595505618, Blast_Score=168, Evalue=3e-42,
Organism=Homo sapiens, GI13569840, Length=169, Percent_Identity=49.112426035503, Blast_Score=154, Evalue=5e-38,
Organism=Homo sapiens, GI154813199, Length=166, Percent_Identity=34.3373493975904, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=32.183908045977, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI93141018, Length=177, Percent_Identity=32.2033898305085, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI93141020, Length=177, Percent_Identity=32.2033898305085, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI4758496, Length=177, Percent_Identity=32.2033898305085, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI207450721, Length=168, Percent_Identity=35.1190476190476, Blast_Score=91, Evalue=4e-19,
Organism=Homo sapiens, GI8923143, Length=168, Percent_Identity=35.1190476190476, Blast_Score=91, Evalue=4e-19,
Organism=Homo sapiens, GI226371718, Length=175, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI226371716, Length=175, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI226371714, Length=175, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI226371712, Length=175, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI226371710, Length=175, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI226371706, Length=175, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI8923920, Length=177, Percent_Identity=25.9887005649718, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI165377137, Length=164, Percent_Identity=29.8780487804878, Blast_Score=74, Evalue=9e-14,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=50.887573964497, Blast_Score=187, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17538214, Length=172, Percent_Identity=45.9302325581395, Blast_Score=125, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24586353, Length=164, Percent_Identity=33.5365853658537, Blast_Score=77, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18684; Mature: 18684

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKIKLIKGNIVDQEVDAIVNAANSSLSGGGGVDGAIHRAGGPSIAEECRVIREKQGGC
CCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCC
PTGHAVITGAGNLKAKYVIHAVGPIWRGGNHNEDNLLASAYIESLKLADEYNVKTIAFPS
CCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
ISTGAYGFPIERAAKIALRVVSDYLEGSDIKEVRFILFSDKDYEVYSKAYEELT
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKEKIKLIKGNIVDQEVDAIVNAANSSLSGGGGVDGAIHRAGGPSIAEECRVIREKQGGC
CCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCC
PTGHAVITGAGNLKAKYVIHAVGPIWRGGNHNEDNLLASAYIESLKLADEYNVKTIAFPS
CCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
ISTGAYGFPIERAAKIALRVVSDYLEGSDIKEVRFILFSDKDYEVYSKAYEELT
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]