Click here to switch to the map view.

The map label for this gene is ycbZ [H]

Identifier: 167039941

GI number: 167039941

Start: 1332666

End: 1335026

Strand: Direct

Name: ycbZ [H]

Synonym: Teth514_1297

Alternate gene names: 167039941

Gene position: 1332666-1335026 (Clockwise)

Preceding gene: 167039940

Following gene: 167039942

Centisome position: 54.23

GC content: 33.59

Gene sequence:

>2361_bases
ATGGGAAAGTTGAGTTTTAACAGATTAAAAAGATATGTAAATCCAGAAGTTTTTGATTTTGACACAACTGAAGAAATCCC
TCCATTAGAAGGAATAATAGGACAAGACAGAGCGAAAAAGGCAATGGAATTTGGAATTAAAATAAAACAGAAAGGTTACA
ACATATTTATAACAGGAATAACTGGAACTGGTAAAACTAGTTTTGCCTCCAGTTACATAAAGAAGATTGCAAGAACGGAA
GAAAGGCCAAATGATTGGGTTTATGTATATAATTTTGAAAAACCTGCTCAACCAATAGCGATAGAATTACCAGCTGGAAT
GGGCAAGCAATTCAAAAAAGACATGGAGGATTTTGTGGAACAACTCCAAAGGGATATACCTAAAGCTTTTGAATCGGATT
CTTATGATATGCAAAAGAGTGAGATAATAAAGAAATACCAAGAAAAAAAGAGTGAGCTAATGGAAGAATTAAATACGCTT
GCGAAAAGTTTTGGATTTGTCTTAAGAGATACTCGCACAGGCATTATAAGCATTCCTGTTATTGAAGGAAGGCAAATAAG
TCAAGAAGAGTTTCAGCAATTGGATGAAGAAACAAGAAAAGAAATTGAAAAAAGAGCTGCAGAATTTGAAGTAAAGGCCA
TGCAGATATGGAAGGAAATACAATCTATTGACAAACAAGCGAGGGATGAAATTAAAAATTTGGACAATAATATAGGTCTC
TTTGCTGTAGGTCATTTAATTGAGGATTTGAAGGGAAGATATAAAGTCAATGAAAATGTGCTTAAGTACTTAGAAAGTGT
CAAAAAGGACATTTTAGAAAATATTGAAAGCTTTAAGAGTACTGATGGAGAAGATATGCCATTTCCTTTTTTGATGAGGA
AAGAAAAAGCCTTTTTAAAAAAGTATATGGTTAATTTGTTTGTGGACAATAGCAATACTGAGGGTGCTCCAGTTGTGTTT
GAGTATAATCCTAATTATAATAACATAATAGGAAGTATAGAATACGAAAGTGACTTTGGAGTTGCTACAACGGACTTTAC
TAAAATAAAAGCTGGAGCATTACATAGGGCAAATGGCGGTTATTTAATTTTGCAAGCAAAAGATTTGTTATCTTATCCTT
ATGCTTGGGATGCTTTAAAAAGGTCTTTAAAGACGGAAAAAATTATAATTGAAAATATATCTTCTCAATATGGATTTTTG
TCAATTTCTTCTTTAAAACCAGAGCCTATAAAGTTGGATGTAAAGGTGATTTTAATAGGTACCCCTTATCTTTACTATTT
GCTTTACAATTATGATGAGGACTTTAGCAAACTTTTTAAAATAAAAGTAGATTTTAACGAAGAGATGGAGCTAAATGAAG
AAAATATGAAAAATATGGCTTCTTTTATAAAGACCCACTGTGTAGAAAACAATTTAAAGCCCTTTGACAGGGAAGGTGTT
GCAAAAGTTATAGAGTATAGTACTAGACTTTCTGAGGACCAGGACAAATTAACTACCCGCTTTAACGAAATTGTGGAAGT
ATTGTATGAGGCAGATGCCTGGGCAGGTTTGGAAGGAAGTCAAGTAGTTACAGGAGTCCATGTTAAAAAGGCTATAGAAG
AAAAAATAAAGAGGGTAAATAAGCTAGAAGAAAAAGTTTTAGAATATTTCAAAAGGGACATATATCTTGTTGATGTTGAG
GGAGAAAGAGTAGGAGTTGTCAATGGATTAGCTGTTATAAATTTAGGGGATTATGAATTTGGTAAGCCTTCAAGGATAAC
TGTCACCACATACCCAGGGGAAGAAGGGGTAGTAAACATTGAAAGAGAATCAAAAATGAGTGGTAGAATACACGACAAGG
GAGTTATGATATTGACAGGTTATTTAGGGAGTAAATTTGCAAAAGATTTTCCTTTGACTCTTTCTGCTAGAGTTGTTTTT
GAGCAGTCTTATGAAGGAGTAGAGGGAGATAGTGCTTCCAGTACAGAGCTGTATGCACTCCTTTCCAGCCTTGCAGAAAT
TCCTATAAAACAAGGAATTGCTATAACAGGGTCAGTCAATCAATTTGGGGAGATACAACCGGTGGGAGGAGTGACCCATA
AAATAGAGGGATTTTACAAGGTCTGTAAAGAAAAAGGTTTGACAGGGGAGCAAGGAGTAATAATTCCTCATCAAAATGTC
AATAATTTGGTTTTGACAGAAGAAGTTATAGAAGCAGTTAAAGAAGGGCTTTTCCACATCTACAGTGTAAAAACAATTGA
AGAAGGGATAGAAATTTTGACAGGAAAAAGCTTTGAAGAAATTTACGATAAAGTTTATAGAAAGCTTAAATATTATTATG
GATTATTGTCTAATAAAAAAGAAGATAAAGGGGATAAATAG

Upstream 100 bases:

>100_bases
GAGGACTATCCTTCAGCCAAAATTTATTCTTTGTGTAAAAAGAGGAAAAATTGATTTGTTGGCGAATAATTATTATTAAA
AAGATTGGGTGGGTGTTGTT

Downstream 100 bases:

>100_bases
TGGATTGTGTAACTAAGGAAGAGATAAAAAAATTTGCACAACAAATTGGTGTTGACTTAGTAGGTTTTGCAAGTCCTGAT
TGTTTGAAAGAATATGATAA

Product: peptidase S16, lon domain-containing protein

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 786; Mature: 785

Protein sequence:

>786_residues
MGKLSFNRLKRYVNPEVFDFDTTEEIPPLEGIIGQDRAKKAMEFGIKIKQKGYNIFITGITGTGKTSFASSYIKKIARTE
ERPNDWVYVYNFEKPAQPIAIELPAGMGKQFKKDMEDFVEQLQRDIPKAFESDSYDMQKSEIIKKYQEKKSELMEELNTL
AKSFGFVLRDTRTGIISIPVIEGRQISQEEFQQLDEETRKEIEKRAAEFEVKAMQIWKEIQSIDKQARDEIKNLDNNIGL
FAVGHLIEDLKGRYKVNENVLKYLESVKKDILENIESFKSTDGEDMPFPFLMRKEKAFLKKYMVNLFVDNSNTEGAPVVF
EYNPNYNNIIGSIEYESDFGVATTDFTKIKAGALHRANGGYLILQAKDLLSYPYAWDALKRSLKTEKIIIENISSQYGFL
SISSLKPEPIKLDVKVILIGTPYLYYLLYNYDEDFSKLFKIKVDFNEEMELNEENMKNMASFIKTHCVENNLKPFDREGV
AKVIEYSTRLSEDQDKLTTRFNEIVEVLYEADAWAGLEGSQVVTGVHVKKAIEEKIKRVNKLEEKVLEYFKRDIYLVDVE
GERVGVVNGLAVINLGDYEFGKPSRITVTTYPGEEGVVNIERESKMSGRIHDKGVMILTGYLGSKFAKDFPLTLSARVVF
EQSYEGVEGDSASSTELYALLSSLAEIPIKQGIAITGSVNQFGEIQPVGGVTHKIEGFYKVCKEKGLTGEQGVIIPHQNV
NNLVLTEEVIEAVKEGLFHIYSVKTIEEGIEILTGKSFEEIYDKVYRKLKYYYGLLSNKKEDKGDK

Sequences:

>Translated_786_residues
MGKLSFNRLKRYVNPEVFDFDTTEEIPPLEGIIGQDRAKKAMEFGIKIKQKGYNIFITGITGTGKTSFASSYIKKIARTE
ERPNDWVYVYNFEKPAQPIAIELPAGMGKQFKKDMEDFVEQLQRDIPKAFESDSYDMQKSEIIKKYQEKKSELMEELNTL
AKSFGFVLRDTRTGIISIPVIEGRQISQEEFQQLDEETRKEIEKRAAEFEVKAMQIWKEIQSIDKQARDEIKNLDNNIGL
FAVGHLIEDLKGRYKVNENVLKYLESVKKDILENIESFKSTDGEDMPFPFLMRKEKAFLKKYMVNLFVDNSNTEGAPVVF
EYNPNYNNIIGSIEYESDFGVATTDFTKIKAGALHRANGGYLILQAKDLLSYPYAWDALKRSLKTEKIIIENISSQYGFL
SISSLKPEPIKLDVKVILIGTPYLYYLLYNYDEDFSKLFKIKVDFNEEMELNEENMKNMASFIKTHCVENNLKPFDREGV
AKVIEYSTRLSEDQDKLTTRFNEIVEVLYEADAWAGLEGSQVVTGVHVKKAIEEKIKRVNKLEEKVLEYFKRDIYLVDVE
GERVGVVNGLAVINLGDYEFGKPSRITVTTYPGEEGVVNIERESKMSGRIHDKGVMILTGYLGSKFAKDFPLTLSARVVF
EQSYEGVEGDSASSTELYALLSSLAEIPIKQGIAITGSVNQFGEIQPVGGVTHKIEGFYKVCKEKGLTGEQGVIIPHQNV
NNLVLTEEVIEAVKEGLFHIYSVKTIEEGIEILTGKSFEEIYDKVYRKLKYYYGLLSNKKEDKGDK
>Mature_785_residues
GKLSFNRLKRYVNPEVFDFDTTEEIPPLEGIIGQDRAKKAMEFGIKIKQKGYNIFITGITGTGKTSFASSYIKKIARTEE
RPNDWVYVYNFEKPAQPIAIELPAGMGKQFKKDMEDFVEQLQRDIPKAFESDSYDMQKSEIIKKYQEKKSELMEELNTLA
KSFGFVLRDTRTGIISIPVIEGRQISQEEFQQLDEETRKEIEKRAAEFEVKAMQIWKEIQSIDKQARDEIKNLDNNIGLF
AVGHLIEDLKGRYKVNENVLKYLESVKKDILENIESFKSTDGEDMPFPFLMRKEKAFLKKYMVNLFVDNSNTEGAPVVFE
YNPNYNNIIGSIEYESDFGVATTDFTKIKAGALHRANGGYLILQAKDLLSYPYAWDALKRSLKTEKIIIENISSQYGFLS
ISSLKPEPIKLDVKVILIGTPYLYYLLYNYDEDFSKLFKIKVDFNEEMELNEENMKNMASFIKTHCVENNLKPFDREGVA
KVIEYSTRLSEDQDKLTTRFNEIVEVLYEADAWAGLEGSQVVTGVHVKKAIEEKIKRVNKLEEKVLEYFKRDIYLVDVEG
ERVGVVNGLAVINLGDYEFGKPSRITVTTYPGEEGVVNIERESKMSGRIHDKGVMILTGYLGSKFAKDFPLTLSARVVFE
QSYEGVEGDSASSTELYALLSSLAEIPIKQGIAITGSVNQFGEIQPVGGVTHKIEGFYKVCKEKGLTGEQGVIIPHQNVN
NLVLTEEVIEAVKEGLFHIYSVKTIEEGIEILTGKSFEEIYDKVYRKLKYYYGLLSNKKEDKGDK

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=432, Percent_Identity=32.6388888888889, Blast_Score=234, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 89727; Mature: 89595

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLSFNRLKRYVNPEVFDFDTTEEIPPLEGIIGQDRAKKAMEFGIKIKQKGYNIFITGI
CCCCCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCEEEEEEE
TGTGKTSFASSYIKKIARTEERPNDWVYVYNFEKPAQPIAIELPAGMGKQFKKDMEDFVE
CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHH
QLQRDIPKAFESDSYDMQKSEIIKKYQEKKSELMEELNTLAKSFGFVLRDTRTGIISIPV
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEE
IEGRQISQEEFQQLDEETRKEIEKRAAEFEVKAMQIWKEIQSIDKQARDEIKNLDNNIGL
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
FAVGHLIEDLKGRYKVNENVLKYLESVKKDILENIESFKSTDGEDMPFPFLMRKEKAFLK
HHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KYMVNLFVDNSNTEGAPVVFEYNPNYNNIIGSIEYESDFGVATTDFTKIKAGALHRANGG
HHHHHEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEECCHHHHHHCCEEECCCC
YLILQAKDLLSYPYAWDALKRSLKTEKIIIENISSQYGFLSISSLKPEPIKLDVKVILIG
EEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEEEEEE
TPYLYYLLYNYDEDFSKLFKIKVDFNEEMELNEENMKNMASFIKTHCVENNLKPFDREGV
CCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
AKVIEYSTRLSEDQDKLTTRFNEIVEVLYEADAWAGLEGSQVVTGVHVKKAIEEKIKRVN
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
KLEEKVLEYFKRDIYLVDVEGERVGVVNGLAVINLGDYEFGKPSRITVTTYPGEEGVVNI
HHHHHHHHHHHCCEEEEEECCCEEEEEECEEEEEECCCCCCCCCEEEEEECCCCCCEEEE
ERESKMSGRIHDKGVMILTGYLGSKFAKDFPLTLSARVVFEQSYEGVEGDSASSTELYAL
EHHCCCCCCCCCCCEEEEEECHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHH
LSSLAEIPIKQGIAITGSVNQFGEIQPVGGVTHKIEGFYKVCKEKGLTGEQGVIIPHQNV
HHHHHHCHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCC
NNLVLTEEVIEAVKEGLFHIYSVKTIEEGIEILTGKSFEEIYDKVYRKLKYYYGLLSNKK
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
EDKGDK
CCCCCC
>Mature Secondary Structure 
GKLSFNRLKRYVNPEVFDFDTTEEIPPLEGIIGQDRAKKAMEFGIKIKQKGYNIFITGI
CCCCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCEEEEEEE
TGTGKTSFASSYIKKIARTEERPNDWVYVYNFEKPAQPIAIELPAGMGKQFKKDMEDFVE
CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHH
QLQRDIPKAFESDSYDMQKSEIIKKYQEKKSELMEELNTLAKSFGFVLRDTRTGIISIPV
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEE
IEGRQISQEEFQQLDEETRKEIEKRAAEFEVKAMQIWKEIQSIDKQARDEIKNLDNNIGL
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
FAVGHLIEDLKGRYKVNENVLKYLESVKKDILENIESFKSTDGEDMPFPFLMRKEKAFLK
HHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KYMVNLFVDNSNTEGAPVVFEYNPNYNNIIGSIEYESDFGVATTDFTKIKAGALHRANGG
HHHHHEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEECCHHHHHHCCEEECCCC
YLILQAKDLLSYPYAWDALKRSLKTEKIIIENISSQYGFLSISSLKPEPIKLDVKVILIG
EEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEEEEEE
TPYLYYLLYNYDEDFSKLFKIKVDFNEEMELNEENMKNMASFIKTHCVENNLKPFDREGV
CCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
AKVIEYSTRLSEDQDKLTTRFNEIVEVLYEADAWAGLEGSQVVTGVHVKKAIEEKIKRVN
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
KLEEKVLEYFKRDIYLVDVEGERVGVVNGLAVINLGDYEFGKPSRITVTTYPGEEGVVNI
HHHHHHHHHHHCCEEEEEECCCEEEEEECEEEEEECCCCCCCCCEEEEEECCCCCCEEEE
ERESKMSGRIHDKGVMILTGYLGSKFAKDFPLTLSARVVFEQSYEGVEGDSASSTELYAL
EHHCCCCCCCCCCCEEEEEECHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHH
LSSLAEIPIKQGIAITGSVNQFGEIQPVGGVTHKIEGFYKVCKEKGLTGEQGVIIPHQNV
HHHHHHCHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCC
NNLVLTEEVIEAVKEGLFHIYSVKTIEEGIEILTGKSFEEIYDKVYRKLKYYYGLLSNKK
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
EDKGDK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]