BacMap

Definition	Thermoanaerobacter sp. X514 chromosome, complete genome.
Accession	NC_010320
Length	2,457,259

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The map label for this gene is yocR [H]

Identifier: 167039754

GI number: 167039754

Start: 1146694

End: 1148055

Strand: Direct

Name: yocR [H]

Synonym: Teth514_1105

Alternate gene names: 167039754

Gene position: 1146694-1148055 (Clockwise)

Preceding gene: 167039752

Following gene: 167039758

Centisome position: 46.67

GC content: 39.21

Gene sequence:

>1362_bases
ATGGAAAAAAGACAAAGAGAAAGTTGGGGTTCTCGGATTGGATTTATCCTGGCAGCTGCAGGTTCAGCAATTGGGCTTGG
TAACATCTGGAGATTCCCATACATGGCCGGTTCAAACGGTGGTAGTGCATTTATTTTAATTTATTTTGTATTCGCATTAG
TCATCGGTCTCAGTATCATGATCGCAGAATTTGCTATCGGACGTAGAACCGGCTTAGCAGCAGTTGGAGCGTACAAATCT
ATTAACAAAAATTGGACCTTTGCAGGGGTTCTTGGTATACTTACTGCCTTCTTTATAATGGGATTCTATCCTGTTGTAGG
AGGTTGGGCACTTGCCTATGTAGTAAAATCTGTAACAGGCCTACTGTCAAATGCAGGATCAATTGCTGATGCCTTTGGTG
GCTTTATCTCTAGCCCAGTGGAGCCTTTGATTTGGATGGGCATATTCTTAGCAATGAATATCTTTATCGTTGCCAGAGGT
ATTGCAGGGGGAATTGAAAAAGCAAGCAGTATTCTTCTGCCTACATTATTTGTGCTACTTATTCTAATCGCACTTAGAAG
TATAACATTACCAGGAGCGGGAGCGGGTATTGAATTCCTATTCAAACCTGATTTTAGTGCTGTTACTGGTCAGACCTTTC
TTGCAGCTTTGGGACAGGCATTCTTCTCTCTAAGTTTAGGTATGGGCTGTATGATAACATACGGTAGTTATCTAAGTAAG
AGTGAGAACCTTCCAAGCAACGCGTTGATAGTTACATTAATGGATACTATTGTTGCTATTCTTGCAGGTTTGGCAATATT
CCCAGCGGTGTTTGCTTATGGAATGGAACCAACAGCTGGACCAGGGTTGGTATTCGTAGTTGTTCCTACAATCTTTGCTG
AAATGGGAGCATTGGGAATTCTCTTCTCAGTTATATTCTTCATTGCTCTTACAGTTGCAGCTCTTACTTCATCAATATCA
TTACTTGAAGTAGTTACAGCTTATCTGATTGACGAAAGAGGAATGGAAAGAAAGAAAGCTGTTTATATCTCCGGAACTAT
TATGTTAGTTACAGGAATTTTTTCATCCCTATCATTGGGAGTTATGTCAGATGTAAAATTCCTTGGAGTTGGAGTATTTG
ACTTCTTCGATATCTTAACAGATAAGATATTCCTTGCAATCGGTGGATTGTTACTGGCTATATTTGTTGGCTGGGTCGTT
AAGAAGGAGGACCTTGAGGATGAGCTTACAAATGGTGGAACTATTAAGTTTCCACTGTTTAACGTATGGTACAATCTTAT
TAAGTATGTAATTCCAGTAGCTATAGTGTCAATTCTCAAATTAAATCTCCAAAGATTTTCAAATTATAATGGCATTTTTT
AA

Upstream 100 bases:

>100_bases
AAATAAAAAATAAAAAATAAAAAGGTTATTCCGTTTATAGAATCCTTATTTAAGTGTTGCATTTAATATGCAATTTACAT
ACTTAAGGAGGGAATATTTG

Downstream 100 bases:

>100_bases
GTGCATAAAAGTATTTTTTCTCAAATTATCACAGCCTGATTAAAAATTTTTTTCACTTTTTAAGAGCATAACCGCCAAAA
TATGTTAATATCTGTTATTG

Product: sodium:neurotransmitter symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MEKRQRESWGSRIGFILAAAGSAIGLGNIWRFPYMAGSNGGSAFILIYFVFALVIGLSIMIAEFAIGRRTGLAAVGAYKS
INKNWTFAGVLGILTAFFIMGFYPVVGGWALAYVVKSVTGLLSNAGSIADAFGGFISSPVEPLIWMGIFLAMNIFIVARG
IAGGIEKASSILLPTLFVLLILIALRSITLPGAGAGIEFLFKPDFSAVTGQTFLAALGQAFFSLSLGMGCMITYGSYLSK
SENLPSNALIVTLMDTIVAILAGLAIFPAVFAYGMEPTAGPGLVFVVVPTIFAEMGALGILFSVIFFIALTVAALTSSIS
LLEVVTAYLIDERGMERKKAVYISGTIMLVTGIFSSLSLGVMSDVKFLGVGVFDFFDILTDKIFLAIGGLLLAIFVGWVV
KKEDLEDELTNGGTIKFPLFNVWYNLIKYVIPVAIVSILKLNLQRFSNYNGIF

Sequences:

>Translated_453_residues
MEKRQRESWGSRIGFILAAAGSAIGLGNIWRFPYMAGSNGGSAFILIYFVFALVIGLSIMIAEFAIGRRTGLAAVGAYKS
INKNWTFAGVLGILTAFFIMGFYPVVGGWALAYVVKSVTGLLSNAGSIADAFGGFISSPVEPLIWMGIFLAMNIFIVARG
IAGGIEKASSILLPTLFVLLILIALRSITLPGAGAGIEFLFKPDFSAVTGQTFLAALGQAFFSLSLGMGCMITYGSYLSK
SENLPSNALIVTLMDTIVAILAGLAIFPAVFAYGMEPTAGPGLVFVVVPTIFAEMGALGILFSVIFFIALTVAALTSSIS
LLEVVTAYLIDERGMERKKAVYISGTIMLVTGIFSSLSLGVMSDVKFLGVGVFDFFDILTDKIFLAIGGLLLAIFVGWVV
KKEDLEDELTNGGTIKFPLFNVWYNLIKYVIPVAIVSILKLNLQRFSNYNGIF
>Mature_453_residues
MEKRQRESWGSRIGFILAAAGSAIGLGNIWRFPYMAGSNGGSAFILIYFVFALVIGLSIMIAEFAIGRRTGLAAVGAYKS
INKNWTFAGVLGILTAFFIMGFYPVVGGWALAYVVKSVTGLLSNAGSIADAFGGFISSPVEPLIWMGIFLAMNIFIVARG
IAGGIEKASSILLPTLFVLLILIALRSITLPGAGAGIEFLFKPDFSAVTGQTFLAALGQAFFSLSLGMGCMITYGSYLSK
SENLPSNALIVTLMDTIVAILAGLAIFPAVFAYGMEPTAGPGLVFVVVPTIFAEMGALGILFSVIFFIALTVAALTSSIS
LLEVVTAYLIDERGMERKKAVYISGTIMLVTGIFSSLSLGVMSDVKFLGVGVFDFFDILTDKIFLAIGGLLLAIFVGWVV
KKEDLEDELTNGGTIKFPLFNVWYNLIKYVIPVAIVSILKLNLQRFSNYNGIF

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI188528618, Length=419, Percent_Identity=27.2076372315036, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI4507043, Length=422, Percent_Identity=27.2511848341232, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI4507041, Length=511, Percent_Identity=26.4187866927593, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI21361581, Length=485, Percent_Identity=24.9484536082474, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI171184408, Length=507, Percent_Identity=24.65483234714, Blast_Score=130, Evalue=4e-30,
Organism=Homo sapiens, GI171184406, Length=507, Percent_Identity=24.65483234714, Blast_Score=130, Evalue=4e-30,
Organism=Homo sapiens, GI171184404, Length=507, Percent_Identity=24.65483234714, Blast_Score=130, Evalue=4e-30,
Organism=Homo sapiens, GI289191351, Length=511, Percent_Identity=25.2446183953033, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI4557046, Length=511, Percent_Identity=25.2446183953033, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI289191377, Length=511, Percent_Identity=25.2446183953033, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI33354281, Length=298, Percent_Identity=27.5167785234899, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI51468073, Length=298, Percent_Identity=27.8523489932886, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI7657587, Length=472, Percent_Identity=24.364406779661, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI194018524, Length=294, Percent_Identity=29.5918367346939, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI134304856, Length=394, Percent_Identity=28.4263959390863, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI197276623, Length=339, Percent_Identity=26.2536873156342, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI54607094, Length=339, Percent_Identity=26.2536873156342, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI58219014, Length=298, Percent_Identity=27.8523489932886, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI11181770, Length=298, Percent_Identity=27.8523489932886, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI12408638, Length=269, Percent_Identity=27.8810408921933, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI5032097, Length=343, Percent_Identity=25.0728862973761, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI67782317, Length=417, Percent_Identity=24.4604316546763, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI67782313, Length=417, Percent_Identity=24.4604316546763, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI67782315, Length=417, Percent_Identity=24.4604316546763, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI21361693, Length=141, Percent_Identity=30.4964539007092, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI218563756, Length=335, Percent_Identity=25.0746268656716, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI197276625, Length=121, Percent_Identity=35.5371900826446, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI92859670, Length=208, Percent_Identity=30.2884615384615, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI289191353, Length=288, Percent_Identity=26.3888888888889, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI300360519, Length=264, Percent_Identity=25, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI6005715, Length=171, Percent_Identity=29.2397660818713, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554804, Length=460, Percent_Identity=27.1739130434783, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI25146584, Length=402, Percent_Identity=24.8756218905473, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71998244, Length=334, Percent_Identity=29.3413173652695, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17535731, Length=435, Percent_Identity=26.2068965517241, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71995588, Length=395, Percent_Identity=22.7848101265823, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17569475, Length=397, Percent_Identity=23.1738035264484, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI212642127, Length=257, Percent_Identity=26.8482490272374, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI133952791, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17555248, Length=114, Percent_Identity=35.0877192982456, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17542050, Length=142, Percent_Identity=30.9859154929577, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24762620, Length=388, Percent_Identity=28.8659793814433, Blast_Score=144, Evalue=1e-34,
Organism=Drosophila melanogaster, GI221329674, Length=499, Percent_Identity=26.25250501002, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24639514, Length=499, Percent_Identity=26.25250501002, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI17136952, Length=385, Percent_Identity=24.9350649350649, Blast_Score=134, Evalue=2e-31,
Organism=Drosophila melanogaster, GI281364394, Length=385, Percent_Identity=24.9350649350649, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI28574704, Length=385, Percent_Identity=24.9350649350649, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI17136950, Length=385, Percent_Identity=24.9350649350649, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI28574702, Length=385, Percent_Identity=24.9350649350649, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24639516, Length=518, Percent_Identity=25.6756756756757, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI19921936, Length=396, Percent_Identity=27.5252525252525, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI281363702, Length=444, Percent_Identity=26.5765765765766, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI19921352, Length=398, Percent_Identity=26.6331658291457, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24584353, Length=398, Percent_Identity=26.6331658291457, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI281365034, Length=388, Percent_Identity=25.7731958762887, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24661428, Length=380, Percent_Identity=26.0526315789474, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45551088, Length=376, Percent_Identity=26.8617021276596, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24652942, Length=376, Percent_Identity=26.8617021276596, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI281364136, Length=426, Percent_Identity=25.5868544600939, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=29.96632996633, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281363700, Length=303, Percent_Identity=28.7128712871287, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24654186, Length=275, Percent_Identity=28.7272727272727, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24582567, Length=451, Percent_Identity=23.2815964523282, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI45550877, Length=179, Percent_Identity=32.9608938547486, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI45551183, Length=179, Percent_Identity=32.9608938547486, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24639853, Length=198, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48359; Mature: 48359

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRQRESWGSRIGFILAAAGSAIGLGNIWRFPYMAGSNGGSAFILIYFVFALVIGLSIM
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHH
IAEFAIGRRTGLAAVGAYKSINKNWTFAGVLGILTAFFIMGFYPVVGGWALAYVVKSVTG
HHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSNAGSIADAFGGFISSPVEPLIWMGIFLAMNIFIVARGIAGGIEKASSILLPTLFVLL
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIALRSITLPGAGAGIEFLFKPDFSAVTGQTFLAALGQAFFSLSLGMGCMITYGSYLSK
HHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
SENLPSNALIVTLMDTIVAILAGLAIFPAVFAYGMEPTAGPGLVFVVVPTIFAEMGALGI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHH
LFSVIFFIALTVAALTSSISLLEVVTAYLIDERGMERKKAVYISGTIMLVTGIFSSLSLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEECHHHHHHHHHHHHHHH
VMSDVKFLGVGVFDFFDILTDKIFLAIGGLLLAIFVGWVVKKEDLEDELTNGGTIKFPLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
NVWYNLIKYVIPVAIVSILKLNLQRFSNYNGIF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEKRQRESWGSRIGFILAAAGSAIGLGNIWRFPYMAGSNGGSAFILIYFVFALVIGLSIM
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHH
IAEFAIGRRTGLAAVGAYKSINKNWTFAGVLGILTAFFIMGFYPVVGGWALAYVVKSVTG
HHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSNAGSIADAFGGFISSPVEPLIWMGIFLAMNIFIVARGIAGGIEKASSILLPTLFVLL
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIALRSITLPGAGAGIEFLFKPDFSAVTGQTFLAALGQAFFSLSLGMGCMITYGSYLSK
HHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
SENLPSNALIVTLMDTIVAILAGLAIFPAVFAYGMEPTAGPGLVFVVVPTIFAEMGALGI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHH
LFSVIFFIALTVAALTSSISLLEVVTAYLIDERGMERKKAVYISGTIMLVTGIFSSLSLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEECHHHHHHHHHHHHHHH
VMSDVKFLGVGVFDFFDILTDKIFLAIGGLLLAIFVGWVVKKEDLEDELTNGGTIKFPLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
NVWYNLIKYVIPVAIVSILKLNLQRFSNYNGIF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]