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The map label for this gene is yfiF [H]

Identifier: 167039752

GI number: 167039752

Start: 1144086

End: 1144982

Strand: Direct

Name: yfiF [H]

Synonym: Teth514_1103

Alternate gene names: 167039752

Gene position: 1144086-1144982 (Clockwise)

Preceding gene: 167039751

Following gene: 167039754

Centisome position: 46.56

GC content: 27.65

Gene sequence:

>897_bases
GTGAATATGTATAGAGCTTCTGAAGAATTATCTAAACTGGATATTCAAGTTTCTATTGATGATTTTATAATAAATGTATT
ATGGTTTAGAGTGATGGTTAGAGAAGGGGAATGGGAAATACCAAGACATACTCATTCTAGTTTTGAATTTCATTTTGTTC
CGGAAGGGGATTCACTAGTTATTCTTGATGATGAGCAATTTGTAGTCAAAAAAGGTGAATTTTATGTTACAGCACCGGGA
ATTTATCATGAGCAACGTTCAATAGGGGAAAAATATATAGAATATAGCATAAATTGTGATTTTAAAAAAACAGAGAAAGA
AGTTTTCTCTGAAATAGATATTATTTTTGAAATATTAAGCTCAGCAAAATGTTTTCCAGTCAAAGATCGATATGGAGCAA
TGAAGTATTTCGAATTAGCTCTACAAGAGGCATATGCACAAAAAATAGGATTTTACAATAATATAAAAAGTTTAATTGTC
ATGATACTTACTATGGCTGCACGTGCCTTGGTTTTTGATAACAAAATATCTTCTTATTATCCTGTGCCTAAAAAATTAAA
AGAAACTGATTATAGGTTTACTTTGATAAAAAAATTTATTGAAGATAATATTTCAGATGTTCGTAAAGTAGAAGATATAG
CAAATTATCTTCATCTCAGTCCTAAACAGATAAATAGAATTGTAAAAGAAAAAACAAATAAATCTACAAAAGAGCTAATA
AACTTTCTTAAGCTTCAGGAGGCAAAAGAAATGCTAAAAAATACAAATATTTCAATTAAAGAAATAGCTAATAGACTAGG
TTTTTCTAGTGAATATTATTTTAATCAATTTTTTAAAAGAGAAGAAGGATATCCTCCGGGACTTTATAGAGATAATATTA
AGAAGTATTACTATTAA

Upstream 100 bases:

>100_bases
TAACGTTAATTAAAAAATTTTTTTAAGTAATTTTAGCTTTGATAAGAATAAGTATGTATTAAGTTTATATGTAGTGCTCC
TATTGTGGGGGTGGCATTTT

Downstream 100 bases:

>100_bases
TATTTTATTTTTTTATTGAAAGTGAAAGTATTACTAGAGGAATTCAAAAAATTCATAAAGAGCTGGAATCAGTAGATCCC
AGCTCTTTACATAATTTAGA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNMYRASEELSKLDIQVSIDDFIINVLWFRVMVREGEWEIPRHTHSSFEFHFVPEGDSLVILDDEQFVVKKGEFYVTAPG
IYHEQRSIGEKYIEYSINCDFKKTEKEVFSEIDIIFEILSSAKCFPVKDRYGAMKYFELALQEAYAQKIGFYNNIKSLIV
MILTMAARALVFDNKISSYYPVPKKLKETDYRFTLIKKFIEDNISDVRKVEDIANYLHLSPKQINRIVKEKTNKSTKELI
NFLKLQEAKEMLKNTNISIKEIANRLGFSSEYYFNQFFKREEGYPPGLYRDNIKKYYY

Sequences:

>Translated_298_residues
MNMYRASEELSKLDIQVSIDDFIINVLWFRVMVREGEWEIPRHTHSSFEFHFVPEGDSLVILDDEQFVVKKGEFYVTAPG
IYHEQRSIGEKYIEYSINCDFKKTEKEVFSEIDIIFEILSSAKCFPVKDRYGAMKYFELALQEAYAQKIGFYNNIKSLIV
MILTMAARALVFDNKISSYYPVPKKLKETDYRFTLIKKFIEDNISDVRKVEDIANYLHLSPKQINRIVKEKTNKSTKELI
NFLKLQEAKEMLKNTNISIKEIANRLGFSSEYYFNQFFKREEGYPPGLYRDNIKKYYY
>Mature_298_residues
MNMYRASEELSKLDIQVSIDDFIINVLWFRVMVREGEWEIPRHTHSSFEFHFVPEGDSLVILDDEQFVVKKGEFYVTAPG
IYHEQRSIGEKYIEYSINCDFKKTEKEVFSEIDIIFEILSSAKCFPVKDRYGAMKYFELALQEAYAQKIGFYNNIKSLIV
MILTMAARALVFDNKISSYYPVPKKLKETDYRFTLIKKFIEDNISDVRKVEDIANYLHLSPKQINRIVKEKTNKSTKELI
NFLKLQEAKEMLKNTNISIKEIANRLGFSSEYYFNQFFKREEGYPPGLYRDNIKKYYY

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=103, Percent_Identity=28.1553398058252, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35357; Mature: 35357

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMYRASEELSKLDIQVSIDDFIINVLWFRVMVREGEWEIPRHTHSSFEFHFVPEGDSLV
CCCCHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEE
ILDDEQFVVKKGEFYVTAPGIYHEQRSIGEKYIEYSINCDFKKTEKEVFSEIDIIFEILS
EECCCEEEEECCCEEEECCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHH
SAKCFPVKDRYGAMKYFELALQEAYAQKIGFYNNIKSLIVMILTMAARALVFDNKISSYY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PVPKKLKETDYRFTLIKKFIEDNISDVRKVEDIANYLHLSPKQINRIVKEKTNKSTKELI
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
NFLKLQEAKEMLKNTNISIKEIANRLGFSSEYYFNQFFKREEGYPPGLYRDNIKKYYY
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MNMYRASEELSKLDIQVSIDDFIINVLWFRVMVREGEWEIPRHTHSSFEFHFVPEGDSLV
CCCCHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEE
ILDDEQFVVKKGEFYVTAPGIYHEQRSIGEKYIEYSINCDFKKTEKEVFSEIDIIFEILS
EECCCEEEEECCCEEEECCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHH
SAKCFPVKDRYGAMKYFELALQEAYAQKIGFYNNIKSLIVMILTMAARALVFDNKISSYY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PVPKKLKETDYRFTLIKKFIEDNISDVRKVEDIANYLHLSPKQINRIVKEKTNKSTKELI
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
NFLKLQEAKEMLKNTNISIKEIANRLGFSSEYYFNQFFKREEGYPPGLYRDNIKKYYY
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377 [H]